View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11814_low_40 (Length: 230)

Name: NF11814_low_40
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11814_low_40
NF11814_low_40
[»] chr4 (1 HSPs)
chr4 (1-119)||(1923413-1923536)
[»] chr7 (3 HSPs)
chr7 (157-225)||(1774726-1774794)
chr7 (152-206)||(24976968-24977022)
chr7 (157-206)||(24977352-24977401)
[»] chr1 (3 HSPs)
chr1 (157-206)||(3223094-3223143)
chr1 (157-206)||(1796905-1796954)
chr1 (169-215)||(38010817-38010863)
[»] chr6 (1 HSPs)
chr6 (157-225)||(6889395-6889463)
[»] scaffold0408 (1 HSPs)
scaffold0408 (157-206)||(10037-10086)
[»] chr8 (1 HSPs)
chr8 (157-206)||(14099695-14099744)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1923536 - 1923413
Alignment:
Q  1 caaagaattgcttaacttttagccaaaccatcaaattgtgttaccacatgttgaatcatattgagagtgcgtacatgcatcatc-----acattgaattt 95  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  1923536 caaagagttgcttaacttttagccaaaccatcaaattgtgttaccacatgttgaatcatattgagagtgcgtacatgcatcatcacatcacattgaattt 1923437  T
Q  96 agaacaactatatatagaagtgac 119  Q
    ||||||||||||||||||||||||    
T  1923436 agaacaactatatatagaagtgac 1923413  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 1774794 - 1774726
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtataagaatgttagt 225  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1774794 tgttagagagtgatattagactgaaatgaataatttagctatttagtttataagtataagaatgttagt 1774726  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 24976968 - 24977022
Alignment:
Q  152 gttattgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    |||| ||||||||||||  |||||| | ||||||||||||||| |||||||||||    
T  24976968 gttactgttagagagtgcaattagatttaaatgaataatttagttatttagttta 24977022  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 24977401 - 24977352
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    ||||||||||||  |||||| |  ||||||||||||||||||||||||||    
T  24977401 tgttagagagtgcaattagatttcaatgaataatttagctatttagttta 24977352  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 3223143 - 3223094
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  3223143 tgttagagagttatattagacttaaatgaataatttagctatttagttta 3223094  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 1796905 - 1796954
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  1796905 tgttagagagtgatattagactcaaataaatgatttaactatttagttta 1796954  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 38010863 - 38010817
Alignment:
Q  169 atattagactcaaatgaataatttagctatttagtttataagtataa 215  Q
    ||||||||||||||| ||||||||| ||||||| |||| ||||||||    
T  38010863 atattagactcaaataaataatttacctatttaatttagaagtataa 38010817  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 6889395 - 6889463
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtataagaatgttagt 225  Q
    ||||||||||||  | ||||||||||| |||||||||||||||||||||||||||| ||  ||||||||    
T  6889395 tgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagt 6889463  T

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Target: scaffold0408 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 10037 - 10086
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    ||||||||||||  | ||||||||||| |||||||||| |||||||||||    
T  10037 tgttagagagtgcaactagactcaaataaataatttagatatttagttta 10086  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 14099695 - 14099744
Alignment:
Q  157 tgttagagagtgatattagactcaaatgaataatttagctatttagttta 206  Q
    ||||||||||||  | ||||||||||| |||||||||| |||||||||||    
T  14099695 tgttagagagtgcaactagactcaaataaataatttagatatttagttta 14099744  T

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