View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_41 (Length: 229)
Name: NF11814_low_41
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_41 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 42413112 - 42413334
Alignment:
| Q |
7 |
cgcggaaagatcaagatattcaagtctcttaagttcaatgatttcttgaggaataccaccagtgaaaaagttatctgagaaggtgagtctagtgagtttt |
106 |
Q |
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| T |
42413112 |
cgcggaaagatcaagatattcaagtctcttaagttcaatgatttcttgaggaataccaccagtgaaaaagttatctgagaaggtgagtctagtgagtttt |
42413211 |
T |
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| Q |
107 |
ctcaaattgccaatggtttctggtattggtcctctaaacttgttattgttgagattgagtattgttagctctgttaggttccctataactggtgttaaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42413212 |
ctcaaattgccaatggtttctggtattggtcctctaaacttgttattgttgagattgagtattgttagctctgttaggttccctataactggtgttaaga |
42413311 |
T |
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| Q |
207 |
atccttcataaccaatgccatca |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
42413312 |
atccttcataaccaatgccatca |
42413334 |
T |
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