View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_6 (Length: 514)
Name: NF11814_low_6
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Original strand, 12861334 - 12861827
Alignment:
| Q |
7 |
atgaaaactttcgcacttaccatgtctacattcatgacagccaaatcaacttcgaagtcaccgttaccgccactgcttcagtcgtaacaaactggctccg |
106 |
Q |
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| T |
12861334 |
atgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgttgtaacaaactggctccg |
12861433 |
T |
|
| Q |
107 |
tacaatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgac |
206 |
Q |
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| T |
12861434 |
tactatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgac |
12861533 |
T |
|
| Q |
207 |
acgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaaga |
306 |
Q |
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| T |
12861534 |
acgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaaga |
12861633 |
T |
|
| Q |
307 |
acaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatctgaggaatta |
406 |
Q |
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| T |
12861634 |
acaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaatta |
12861733 |
T |
|
| Q |
407 |
cgagttcaatggtgaagctctttcaagtttatcgatggatgaaattgtgaggaaatgtcttggtttcaaagtggatcagagtattgaagttggt |
500 |
Q |
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| T |
12861734 |
cgagttcaatggtgaagctctttcacgtttatcgatggatgaaattgtgaggaaatgtcttggtttcaaagtggatcagagtattgaagttggt |
12861827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 145 - 488
Target Start/End: Complemental strand, 12844009 - 12843666
Alignment:
| Q |
145 |
gtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatctt |
244 |
Q |
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| T |
12844009 |
gtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatctt |
12843910 |
T |
|
| Q |
245 |
ccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgcagatcgtagg |
344 |
Q |
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| T |
12843909 |
ccacctctctctcgccgatatgattccggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtaga |
12843810 |
T |
|
| Q |
345 |
aagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatctgaggaattacgagttcaatggtgaagctctttcaagtttatcgatgg |
444 |
Q |
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| T |
12843809 |
aggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgataa |
12843710 |
T |
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| Q |
445 |
atgaaattgtgaggaaatgtcttggtttcaaagtggatcagagt |
488 |
Q |
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| T |
12843709 |
atgtaattgtgaggaattggcttgatttcgaagtggatcagagt |
12843666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 12844183 - 12844050
Alignment:
| Q |
7 |
atgaaaactttcgcacttaccatgtctacattcatgacagccaaatcaacttcgaagtcaccgttaccgccactgcttcagtcgtaacaaactggctccg |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
12844183 |
atgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgtcgtaacaaactggctcca |
12844084 |
T |
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| Q |
107 |
tacaatgctcgatcatcaccttcaatacctccgc |
140 |
Q |
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| T |
12844083 |
aagtatgctcaatcatcattttcaatccctccgc |
12844050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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