View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_7 (Length: 466)
Name: NF11814_low_7
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 4112153 - 4112485
Alignment:
| Q |
1 |
accctattgtgagtcctccttcagaatttgatcatgcagaaaagggagatgcattgtatggtgagtgttctgttttcatttactttgattgttttttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112153 |
accctattgtgagtcctccttcagaatttgatcatgcagaaaagggagatgcattgtatggtgagtgttctgttttcatttactttgattgttttttcct |
4112252 |
T |
|
| Q |
101 |
ctgttttgatttatcatattctattgcatgaaacaaagacaatttttataatgaatagttttaagtatatggaagtgattattgattaaatataatcaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112253 |
ctgttttgatttatcatattctattgcatgaaacacagacaatttttataatga-tagttttaagtatatggaagtgattattgattaaatataatcaca |
4112351 |
T |
|
| Q |
201 |
tgtgtcggtctcatgatcattatgcattagacaccaaacacgttctcgatctgcagtgtcgatgctacatcataaataaataatatttgcacgttcaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112352 |
tgtgtcggtctcatgatcattatgcattagacaccaaacacgttctcgatctgcagtgtcgatgctacatcataaataaataatatttgcacgttcaatg |
4112451 |
T |
|
| Q |
301 |
ttaaaagcctttaattatttatgctgactcttac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4112452 |
ttaaaagcctttaattatttatgctgactcttac |
4112485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 4112520 - 4112608
Alignment:
| Q |
368 |
gattcagccatggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctctttctctctg |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112520 |
gattcagccatggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctctttctctctg |
4112608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 25792934 - 25792862
Alignment:
| Q |
377 |
atggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctcttt |
449 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
25792934 |
atggaattagctttgtctttggagaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctcttt |
25792862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 30901480 - 30901526
Alignment:
| Q |
20 |
ttcagaatttgatcatgcagaaaagggagatgcattgtatggtgagt |
66 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
30901480 |
ttcagagtttgatcatgcagaaaagggtgatgcattaaatggtgagt |
30901526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University