View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_8 (Length: 447)
Name: NF11814_low_8
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 2525103 - 2525512
Alignment:
| Q |
7 |
tcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggttatgcaatataataattgaattatagtttattct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525103 |
tcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggttatgcaatataataattgaattatagtttattct |
2525202 |
T |
|
| Q |
107 |
attccattttatagctcatatgcaaataagaaaagcaaagatatgaaatttatttatcttatgttatactgatatgatatttatcttatttttagataag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525203 |
attccattttatagctcatatgcaaataagaaaagcaaggatatgaaatttatttatcttatgttatactgatatgatatttatcttatttttagataag |
2525302 |
T |
|
| Q |
207 |
cactatgatattattacgatttaattatatttgagaaattatatttgagaaactcatgaaaaatgtgtgaattaatcagcatcggcagccttggtaaaca |
306 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2525303 |
cactatgatattattatgattt--------------aattatattttagaaactcatgaaaaatgtgtgaattaatcagcattggcagccttggtaaaca |
2525388 |
T |
|
| Q |
307 |
taattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaattac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525389 |
taattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaattac |
2525488 |
T |
|
| Q |
407 |
tactatagtttgtgttgggaaatt |
430 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
2525489 |
tactatagtttgtggtgggaaatt |
2525512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 266 - 402
Target Start/End: Original strand, 32925662 - 32925798
Alignment:
| Q |
266 |
aaaatgtgtgaattaatcagcatcggcagccttggtaaacataattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatacta |
365 |
Q |
| |
|
|||||||||| ||||| ||| || || |||||||||||| |||||| |||| | |||||||||||| |||||| ||||||||||||| | |||||| |
|
|
| T |
32925662 |
aaaatgtgtgtattaaacagtattgggagccttggtaaaggaaattcttatgagacggttgaagaagttaatgtaccaaactgcagcttcactaatacta |
32925761 |
T |
|
| Q |
366 |
caaatggagcaagaatcaagacatttcctgtgagtaa |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32925762 |
caaatggagcaagaatcaaaacatttcctgtgagtaa |
32925798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 402
Target Start/End: Complemental strand, 11658318 - 11658182
Alignment:
| Q |
266 |
aaaatgtgtgaattaatcagcatcggcagccttggtaaacataattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatacta |
365 |
Q |
| |
|
|||| |||||||| || |||||| || |||||||||| | || | ||| || | | |||||||||||||||||||| || || ||||||| | | |||| |
|
|
| T |
11658318 |
aaaacgtgtgaatgaagcagcattggtagccttggtataaatgagtcttatcagacagttgaagaagtttatgtacataattgtagcttcactaacacta |
11658219 |
T |
|
| Q |
366 |
caaatggagcaagaatcaagacatttcctgtgagtaa |
402 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11658218 |
caaatggagctagaatcaagacatttcctgtgagtaa |
11658182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 13559004 - 13559043
Alignment:
| Q |
363 |
ctacaaatggagcaagaatcaagacatttcctgtgagtaa |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
13559004 |
ctacaaatggagcaagaataaagacatttccggtgagtaa |
13559043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University