View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11814_low_9 (Length: 400)

Name: NF11814_low_9
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11814_low_9
NF11814_low_9
[»] chr7 (6 HSPs)
chr7 (1-388)||(25484177-25484564)
chr7 (1-330)||(25436275-25436604)
chr7 (1-292)||(25442322-25442613)
chr7 (1-296)||(25636510-25636805)
chr7 (51-293)||(25478807-25479049)
chr7 (353-397)||(25484147-25484191)
[»] chr5 (1 HSPs)
chr5 (57-305)||(500196-500444)
[»] chr2 (5 HSPs)
chr2 (57-295)||(35169522-35169760)
chr2 (100-299)||(35105905-35106104)
chr2 (51-296)||(35177807-35178052)
chr2 (88-314)||(35183842-35184068)
chr2 (131-296)||(35055023-35055188)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 25484564 - 25484177
Alignment:
Q  1 tcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttgaagaagcataatctttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25484564 tcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttgaagaagcataatctttgg 25484465  T
Q  101 agaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25484464 agaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaa 25484365  T
Q  201 aataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25484364 aataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttgg 25484265  T
Q  301 ttgctattagaatctgtagaagaactagaagctgtacctccctctcttggcagaccaaacagcttattcataggaccaaacagcttat 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25484264 ttgctattagaatctgtagaagaactagaagctgtacctccctctcttggcagaccaaacatcttattcataggaccaaacagcttat 25484177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 25436275 - 25436604
Alignment:
Q  1 tcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttgaagaagcataatctttgg 100  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||| | |    
T  25436275 tcataaaaaacagggaatacaacttgtttcaatttttttctagattcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctcttg 25436374  T
Q  101 agaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaa 200  Q
    |||||||||  ||| |||  |||||| || |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||    
T  25436375 agaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagttggggtgaaatggcttctcctttttggagctgcttgtcatccttgaaggtaaa 25436474  T
Q  201 aataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttgg 300  Q
    |||||||||||||   ||||||| || |||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||| | ||| |    
T  25436475 aataccttttctaactagatgagagtggagatgatcaacaaaagaattgcgggtctcagaacctctaaaactgatgaacacatcgtatttatggttttcg 25436574  T
Q  301 ttgctattagaatctgtagaagaactagaa 330  Q
     |||||  | ||||| | ||||||||||||    
T  25436575 atgctaccataatctttggaagaactagaa 25436604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 25442613 - 25442322
Alignment:
Q  1 tcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttgaagaagcataatctttgg 100  Q
    ||||| || ||||| |||||||||||||||||  || | || |||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25442613 tcatagaagacaggaaaaacaacttgtttcaatcttctactggattcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttgg 25442514  T
Q  101 agaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaa 200  Q
    |||| ||||  |||||||  || || | || |||||| || | ||||||| ||||||||| ||| |||||||| |||   |||||||||||||||  |||    
T  25442513 agaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaagacgaa 25442414  T
Q  201 aataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctat 292  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  25442413 aataccttttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgtcaggacctctaaaactgatgaacacatcgtatctat 25442322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 25636805 - 25636510
Alignment:
Q  1 tcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttgaagaagcataatctttgg 100  Q
    ||||| || ||||| ||||||||| |||||||  || | || |||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25636805 tcatagaagacaggaaaaacaactagtttcaatcttctactggattcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttgg 25636706  T
Q  101 agaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaa 200  Q
    |||| ||||  |||||||  || || | || |||||| || | ||||||| ||||||||| ||| |||||||| |||   |||||||||||||||||  |    
T  25636705 agaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaaggtcga 25636606  T
Q  201 aataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagct 296  Q
    ||||||||||||| |||||||||| |||||||||||||||||||  || |||||||||| ||||||||||||||| || ||||| ||| |||||||    
T  25636605 aataccttttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct 25636510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 25478807 - 25479049
Alignment:
Q  51 aatagcagccatttcatccaaacaccatgttgaagaagcataatctttggagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttgg 150  Q
    |||| ||| |||||||||||||||||| |||||   |||||||||||  ||||| |||||||||||||  || || ||||||||||| ||| ||||||||    
T  25478807 aataacagtcatttcatccaaacaccaagttgagccagcataatcttctgagaagacaactatagaaagacgcgattgttgaattgcctgtcgaagttgg 25478906  T
Q  151 ggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattac 250  Q
     ||||||||| ||| |||||||  ||||||| ||||||| |||| |||||||||||||||||| |||||||||| |||||||||||| ||||||  ||||    
T  25478907 agtgaaatggattcccctttctcgagctgctggtcatccatgaacgtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttac 25479006  T
Q  251 gggtgtcagaacctctgaaactgatgaacacatcgtatctata 293  Q
    ||||||||  ||||||||||||||| ||||| |||||||||||    
T  25479007 gggtgtcaatacctctgaaactgataaacacgtcgtatctata 25479049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 25484191 - 25484147
Alignment:
Q  353 gaccaaacagcttattcataggaccaaacagcttatacattgtcc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25484191 gaccaaacagcttattcataggaccaaacagcttatacattgtcc 25484147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 305
Target Start/End: Original strand, 500196 - 500444
Alignment:
Q  57 agccatttcatccaaacaccatgttgaagaagcataatctttggagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaa 156  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||  |||||||  ||||| ||| ||||||| || |||||||| | ||||    
T  500196 agccatttcatccaaacaccatgttgatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcatgaagaagttgagttgaa 500295  T
Q  157 atggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgt 256  Q
    || |  |  ||||| |  |||||    |||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||| |  || || ||||    
T  500296 atagaatgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcaacaaaagtgttgcgtgtgt 500395  T
Q  257 cagaacctctgaaactgatgaacacatcgtatctatagctttggttgct 305  Q
    | ||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  500396 cggaacctctgaaactgataaacacatcatatctatagctttggatgct 500444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 295
Target Start/End: Original strand, 35169522 - 35169760
Alignment:
Q  57 agccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtga 155  Q
    ||||||||| |||||||||||||||||   |||||| |||||  ||||| ||||| |||||||| ||||| | |  |||||||||| || |||| | |||    
T  35169522 agccatttcttccaaacaccatgttgactcagcata-tctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcgatgttgcgttga 35169620  T
Q  156 aatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtg 255  Q
    || |  ||||||||||| ||||   || ||||||||||||| ||||| ||| |||||| | |||||||| || ||||| |||||||| |  |||||||||    
T  35169621 aaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtg 35169720  T
Q  256 tcagaacctctgaaactgatgaacacatcgtatctatagc 295  Q
    ||||  |||||||||||||| |||||||||||| ||||||    
T  35169721 tcagcgcctctgaaactgataaacacatcgtatttatagc 35169760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 35105905 - 35106104
Alignment:
Q  100 gagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtga 199  Q
    ||||| ||||| |||||||  || || | |||||||||||| |||||||| || |||| || |||||||||||  |||   |  |||||||||||||  |    
T  35105905 gagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa 35106004  T
Q  200 aaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttg 299  Q
    ||||||| ||||| || |||||||| || ||||| || ||||| |  || || ||||| | ||||||||||||||| ||||| |||||||||||||||||    
T  35106005 aaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacgtcgtatctatagctttg 35106104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 296
Target Start/End: Original strand, 35177807 - 35178052
Alignment:
Q  51 aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttg 149  Q
    ||||| ||||||||| |||||||||||||||||   |||||| |||||  ||||| ||||| ||||| || ||||| | |  |||||||||| |||||||    
T  35177807 aatagtagccatttcttccaaacaccatgttgactcagcata-tctttctgagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttg 35177905  T
Q  150 gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaatta 249  Q
      | |||| |  |||||||||||  |||   || ||||||||||| |  ||||||||||||||  | |||||||| || ||||| |||||||| |  ||     
T  35177906 cagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttg 35178005  T
Q  250 cgggtgtcagaacctctgaaactgatgaacacatcgtatctatagct 296  Q
    |||||||| | ||||||||||||||| ||||| |||||| |||||||    
T  35178006 cgggtgtctggacctctgaaactgataaacacgtcgtatttatagct 35178052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 35183842 - 35184068
Alignment:
Q  88 gcataatctttggagaaaacaactatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcat 187  Q
    ||||||| ||| ||||| ||||| |||||||| || ||   ||||||||||||||||||||| || |||| || ||||||||| |  ||    |||||||    
T  35183842 gcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcat 35183941  T
Q  188 ccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgta 287  Q
    ||||||| | ||||||||| ||  |  | |||||||| |  ||||| |||||||| |   | |||||||||| ||| | ||||||||| |||||||| ||    
T  35183942 ccttgaaagcgaaaatacccttagttgttagatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcata 35184041  T
Q  288 tctatagctttggttgctattagaatc 314  Q
    ||||||||||||| ||||||| |||||    
T  35184042 tctatagctttggatgctattggaatc 35184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 35055023 - 35055188
Alignment:
Q  131 gaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagag 230  Q
    |||||||||||||||| || ||||||||   |||||||||||  ||    ||||||||||||||||  ||||||||||||||  | |||||||| || ||    
T  35055023 gaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggcaaaaataccttttcttgttagatgagcataaag 35055122  T
Q  231 atggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagct 296  Q
    ||| ||||||||   ||| || ||||||| |||||| ||||||||||||||  ||||| |||||||    
T  35055123 atgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacaccccgtatttatagct 35055188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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