View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11815_low_10 (Length: 223)
Name: NF11815_low_10
Description: NF11815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11815_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 33008838 - 33009032
Alignment:
| Q |
12 |
gagaagaaaaacaccaacaccaatggggtaattatcaaagtgtacgtggaatctcctaaaactcgttccatgaagaaaacaaagccacgtgaaaatctta |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33008838 |
gagaagaaaaacacgcacaccaatggggtaattatcaaagtgtacgtggaatctcctaaaactcgttccatgaagaaaacaaagccacgtgaaaatctta |
33008937 |
T |
|
| Q |
112 |
caaatgcagaaacgcagggatatgaacatgatcgtcgtgctttgcttcttgctcattctcgatctcttagaaaatcatcatctgaaaagaaggtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33008938 |
taaatgcagaaacgcagggatatgaacatgatcgtcgtgctttgcttcttgctcattctcgatctcttagaaaatcagcatctgaaaagaaggtt |
33009032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University