View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11815_low_2 (Length: 599)

Name: NF11815_low_2
Description: NF11815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11815_low_2
NF11815_low_2
[»] chr6 (23 HSPs)
chr6 (19-586)||(6394355-6394921)
chr6 (18-326)||(14820443-14820751)
chr6 (46-288)||(19632227-19632469)
chr6 (54-283)||(6423010-6423239)
chr6 (19-255)||(7994224-7994460)
chr6 (18-172)||(14818287-14818440)
chr6 (119-312)||(6589465-6589658)
chr6 (379-550)||(14820140-14820311)
chr6 (19-153)||(6426434-6426568)
chr6 (19-165)||(6432072-6432218)
chr6 (19-84)||(6409998-6410063)
chr6 (128-287)||(10579888-10580047)
chr6 (51-226)||(6594680-6594855)
chr6 (31-171)||(6402765-6402905)
chr6 (243-340)||(14818152-14818248)
chr6 (19-162)||(6415880-6416023)
chr6 (477-551)||(6426035-6426109)
chr6 (258-329)||(6426279-6426350)
chr6 (19-81)||(14802331-14802393)
chr6 (125-163)||(12102219-12102257)
chr6 (216-276)||(7119002-7119062)
chr6 (216-276)||(7131480-7131540)
chr6 (539-583)||(14820083-14820127)
[»] chr7 (3 HSPs)
chr7 (54-342)||(15092228-15092515)
chr7 (51-162)||(10614507-10614618)
chr7 (465-510)||(15092659-15092704)
[»] chr1 (6 HSPs)
chr1 (344-586)||(49218728-49218976)
chr1 (277-326)||(49219072-49219121)
chr1 (230-330)||(33160474-33160578)
chr1 (31-87)||(19468553-19468609)
chr1 (35-81)||(9581064-9581110)
chr1 (106-171)||(7554393-7554458)
[»] chr8 (3 HSPs)
chr8 (31-172)||(27922412-27922553)
chr8 (32-84)||(32151293-32151345)
chr8 (130-171)||(21235463-21235504)
[»] chr3 (4 HSPs)
chr3 (19-152)||(13470774-13470907)
chr3 (19-170)||(51113823-51113974)
chr3 (31-161)||(51764494-51764624)
chr3 (23-160)||(51120939-51121076)
[»] chr5 (3 HSPs)
chr5 (31-162)||(20478136-20478267)
chr5 (31-171)||(41901589-41901729)
chr5 (31-170)||(32267381-32267520)
[»] chr4 (12 HSPs)
chr4 (107-240)||(21834436-21834569)
chr4 (35-170)||(546819-546954)
chr4 (31-153)||(55908782-55908904)
chr4 (26-83)||(566182-566239)
chr4 (23-172)||(1548470-1548619)
chr4 (131-171)||(1524637-1524677)
chr4 (49-153)||(53761842-53761945)
chr4 (130-175)||(553380-553425)
chr4 (130-171)||(570256-570297)
chr4 (24-84)||(553471-553531)
chr4 (24-84)||(1524533-1524593)
chr4 (23-83)||(8187137-8187197)
[»] chr2 (2 HSPs)
chr2 (31-171)||(45245139-45245279)
chr2 (31-153)||(1037718-1037840)
[»] scaffold0041 (1 HSPs)
scaffold0041 (35-83)||(39177-39225)


Alignment Details
Target: chr6 (Bit Score: 540; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Complemental strand, 6394921 - 6394355
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6394921 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagaaa 6394822  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6394821 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctattgcgtcg 6394722  T
Q  219 tggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttccttt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6394721 tggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctgagaaatttccttt 6394622  T
Q  319 ttaaaatgtcaatcttacaaatttaaaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaataatgccgatgccca 418  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6394621 ttaaaatgtc-atcttacaaatttaaaaggctaggccatggccggatggtggatttttgacaaccattttagtcaatttgtgaaataatgccgatgccca 6394523  T
Q  419 acatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggcatatg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394522 acatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggcatatg 6394423  T
Q  519 aattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394422 aattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 6394355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 14820751 - 14820443
Alignment:
Q  18 atcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagga 117  Q
    |||||||||||  |||||| ||||||| |||| | ||||||| |||||||||||||||||||||| ||||  |||||| || |||||  |||||||||      
T  14820751 atcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatgtcacagag 14820652  T
Q  118 aagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtc 217  Q
    ||||||||| ||||||||||| |||||||||||||  |||||||||||||||||| ||   || || |||||  | ||| |||| ||||  | | |||||    
T  14820651 aagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttggcggggtttcatttaagtctcaaaattaggaaactcatatcgcgtc 14820552  T
Q  218 gtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctt 317  Q
    ||||||| | | |||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||| || |||||| ||||| |||| || ||||    
T  14820551 gtggatgtcatctttgctagtattatgaaattgcgttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctctgagaatttgcctt 14820452  T
Q  318 tttaaaatg 326  Q
    |||||||||    
T  14820451 tttaaaatg 14820443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 46 - 288
Target Start/End: Complemental strand, 19632469 - 19632227
Alignment:
Q  46 ctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaact 145  Q
    |||| |||||||||||||||||||||||||||||||||| |   |||  | ||||||   ||| ||||||  ||||| ||| |||| |||||||||||||    
T  19632469 ctttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaact 19632370  T
Q  146 gcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcgtggatgccgtatttgctagtattctga 245  Q
    ||| |||| |||  |||||| |||||||||||||| ||  ||||||| ||| |||| ||||   |||||||| |||||||| | ||||||||||||| ||    
T  19632369 gcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactctgcttgcgtcatggatgccttctttgctagtattccga 19632270  T
Q  246 aattgctatgctgaagtttgaacactgtaagttctttttgttt 288  Q
    || ||||||  |||||||||||| ||||||||| |||||||||    
T  19632269 aaatgctattatgaagtttgaaccctgtaagttgtttttgttt 19632227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 54 - 283
Target Start/End: Complemental strand, 6423239 - 6423010
Alignment:
Q  54 gatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaactgcacacaa 153  Q
    ||||||||||| |||||||||| |||||||| ||  ||||||  ||||| |  |||| |||   || ||  || ||| |||||||  |||||||||||||    
T  6423239 gatctcaaagagttgttgtgggattttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaa 6423140  T
Q  154 ttgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcgtggatgccgtatttgctagtattctgaaattgcta 253  Q
    |||||||||||| ||||||| ||| || ||||||||||| |||||| | ||||  |||||  ||||||||||| | |||||||||||||||||||| |||    
T  6423139 ttgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatgccttctttgctagtattctgaaatttcta 6423040  T
Q  254 tgctgaagtttgaacactgtaagttctttt 283  Q
    |||| |||||||||||||||||||| ||||    
T  6423039 tgctaaagtttgaacactgtaagttgtttt 6423010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 7994224 - 7994460
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||||||||| ||| |||| ||||| || | |||||||||||||||||||| ||| ||||||||| ||  ||||||   ||||||  |||| || |       
T  7994224 tcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgagg 7994323  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcg 218  Q
    |||| ||| |||||||||||||||||||||| ||| ||| ||||||| |||| |||||| || || |||||||| |||||||||||||  ||| |||||     
T  7994324 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtca 7994423  T
Q  219 tggatgccgtatttgctagtattctgaaattgctatg 255  Q
     ||||||| ||| || ||||||||||||||| |||||    
T  7994424 cggatgccttatctgttagtattctgaaatttctatg 7994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 14818440 - 14818287
Alignment:
Q  18 atcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagga 117  Q
    |||||||||||  |||||| ||||||| |||| | ||||||| |||||||||| ||||||||||| ||||  |||||| |||||||| ||||||||||      
T  14818440 atcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgtaataatgtcacagag 14818341  T
Q  118 aagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgg 172  Q
    ||||||||| ||||||| |||||||||||||||||  ||||||| ||||||||||    
T  14818340 aagggtgtgaaacatgtagtagaaaactgcacacagctgagaga-attaatttgg 14818287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 119 - 312
Target Start/End: Original strand, 6589465 - 6589658
Alignment:
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcg 218  Q
    |||| ||| |||||||||||||||||||||||| | |   ||||||| || ||||||||||| || |||||||| ||| ||||||| |  |||  | ||     
T  6589465 agggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaaatcttctcccatca 6589564  T
Q  219 tggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatt 312  Q
    |||||||| | ||| ||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||| || ||| |||||||| |||||||    
T  6589565 tggatgccatctttactagtattctgaaattgctgtgctaaagtatgaacactgtaagttgtttttgttttaatattcacttctctgagaaatt 6589658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 550
Target Start/End: Complemental strand, 14820311 - 14820140
Alignment:
Q  379 caaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaac 478  Q
    ||||||||  ||||||||||| ||  ||||| |||||| || ||||| ||| || |||||||||||| |  |||||||||| ||| |||||| || ||||    
T  14820311 caaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggcggcgccaaaagtcgcaactcagtggtcaaacttaatttatattttgattcaac 14820212  T
Q  479 ttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat 550  Q
    ||||||| ||||||  ||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||    
T  14820211 ttgaaagctaatatatagtaaataatgtgtatagcttatgaattgattaatgatatgtgtttgaagtatgat 14820140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 6426568 - 6426434
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||| |||||| |||||||||||||| ||| || ||||||||||||||||||| || |||||||||||  |||||| |||||||||  |||||||   |    
T  6426568 tcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggattttgcaattattacttgaaaattgtaaaggtgtcacaatga 6426469  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaa 153  Q
    |||||||| |||| |||||||||||||||||||||    
T  6426468 agggtgtgaaacaagtggtagaaaactgcacacaa 6426434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6432218 - 6432072
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||| ||   ||  | |||||| | |||||||||   |    
T  6432218 tcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatgtcacacaga 6432119  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagagatt 165  Q
    |||| ||| ||| |||||||||||| ||||||||||||||| |||||    
T  6432118 agggagtgaaacttgtggtagaaaaatgcacacaattgagaaagatt 6432072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 6410063 - 6409998
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 84  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  6410063 tcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcggcttttgcaa 6409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 287
Target Start/End: Original strand, 10579888 - 10580047
Alignment:
Q  128 aacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacga-aaatagggaacttctcttgcgtcgtggatgcc 226  Q
    |||||||||||||||||||||||||| | ||||||||| | ||||  ||| | ||| |||| || || |||||||| | |  ||||||||| ||||||||    
T  10579888 aacatgtggtagaaaactgcacacaacttagagagatttacttggatgatttagatttaag-gaggataaataggggattcttcttgcgtcatggatgcc 10579986  T
Q  227 gtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtt 287  Q
     | |||||||||||||| ||| ||||| |||||||||||||| ||||||||| ||||||||    
T  10579987 ttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt 10580047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 6594680 - 6594855
Alignment:
Q  51 tgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaactgcaca 150  Q
    |||||||||||||||||||||||||||||| ||| || |||| || |||||| |  || ||||||   |||| |   |||||||||||||||||||||||    
T  6594680 tgtgatctcaaagaattgttgtgggcttttacaactaaaactagaaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcaca 6594779  T
Q  151 caattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcgtggatgcc 226  Q
    ||||||||||| ||  ||||| ||| |  | || |||||||||||| |||||||||  ||| |||||| |||||||    
T  6594780 caattgagagaaatgtatttgaggggttgtcatttaagtgacgaaattagggaactcttctcgcgtcggggatgcc 6594855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 6402905 - 6402765
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgata-attgtaaaaatgtcacaggaaagggtgtggaa 129  Q
    |||||||||||||| || | ||||||||||||||||||| ||||||||||| || ||  | |||| | ||||| | |||||||||| |||||| | | ||    
T  6402905 gttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactatta-ttgagagattgttataatgtcacagaaaagggagcgaaa 6402807  T
Q  130 catgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    |||||| |||||||||| |||||| ||||||||||| |||||    
T  6402806 catgtgatagaaaactgtacacaactgagagagatttatttg 6402765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 14818248 - 14818152
Alignment:
Q  243 tgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtcaatcttacaaat 340  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| ||| | |||| || ||||||||||||| | |||||||||||    
T  14818248 tgaaattgctttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctttgagaatttgcctttttaaaatgac-atcttacaaat 14818152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 6416023 - 6415880
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||||||||  ||| ||||| ||||||| | ||||||||||||||||||| | |||||||||||| ||  ||||||   |||| | |||||||||| |     
T  6416023 tcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaag 6415924  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagag 162  Q
     ||| ||| ||||||||||||| |||||||||||| | ||||||    
T  6415923 tgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 551
Target Start/End: Complemental strand, 6426109 - 6426035
Alignment:
Q  477 acttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgata 551  Q
    ||||||||| |||||||||  ||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  6426109 acttgaaagctaatatgaacaaaataaggcatatagcttatgaattgactaatgatatgtgtttgaagtgtgata 6426035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 6426350 - 6426279
Alignment:
Q  258 gaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtca 329  Q
    |||||||||||| |||||||| ||||||||| |  |||||||||||| ||||||  ||||||||||||||||    
T  6426350 gaagtttgaacattgtaagttgtttttgttttatgatttacttctctgagaaatagcctttttaaaatgtca 6426279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14802393 - 14802331
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttg 81  Q
    ||||||||||  |||||||||||||| || | |||||| ||||||||||||||||| ||||||    
T  14802393 tcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 12102257 - 12102219
Alignment:
Q  125 tggaacatgtggtagaaaactgcacacaattgagagaga 163  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  12102257 tggatcatgtggtagaaaactgcacacaactgagagaga 12102219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 7119062 - 7119002
Alignment:
Q  216 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 276  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7119062 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7119002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 7131540 - 7131480
Alignment:
Q  216 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 276  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7131540 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7131480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 583
Target Start/End: Complemental strand, 14820127 - 14820083
Alignment:
Q  539 ttgaagtatgataactcaagtatgtttaacttgataatatgtgta 583  Q
    ||||||||||| ||||| || ||||||||||||||| ||||||||    
T  14820127 ttgaagtatgaaaactctagaatgtttaacttgatattatgtgta 14820083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 54 - 342
Target Start/End: Original strand, 15092228 - 15092515
Alignment:
Q  54 gatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaactgcacacaa 153  Q
    ||||||||||||||||||||||||||||||| ||  ||||||   |||| | |||||||||| |  ||| ||| |||||||| |||||||||||||||||    
T  15092228 gatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaa 15092327  T
Q  154 ttgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctcttgcgtcgtggatgccgtatttgctagtattctgaaattgcta 253  Q
    |||||||||||||||||| || ||||  ||||||||||| ||| |||| ||||  ||| |||||||||||||| ||||||||||||||||||||||||||    
T  15092328 ttgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaactattctcgcgtcgtggatgccatatttgctagtattctgaaattgcta 15092427  T
Q  254 tgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtcaatcttacaaattt 342  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  15092428 tgctgaagtttgaacactgtaagttctttttgtttcaagatttacttctctgagaaatttcctttttaaaatgtc-atctttcaaattt 15092515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 10614618 - 10614507
Alignment:
Q  51 tgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaactgcaca 150  Q
    ||||||||| ||||| ||| |||||||||||||| ||  ||||||   || | | |||||||||| | | || ||| |||||||||||||||||||||      
T  10614618 tgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgtcacagaagaaggagtgaaacatgtggtagaaaactgcatg 10614519  T
Q  151 caattgagagag 162  Q
    ||||||||||||    
T  10614518 caattgagagag 10614507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 15092659 - 15092704
Alignment:
Q  465 tattttaatccaacttgaaagttaatatgaagtaaataaggcatat 510  Q
    |||||| || ||||||||||| |||||| |||||||||||||||||    
T  15092659 tattttgattcaacttgaaagctaatataaagtaaataaggcatat 15092704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 344 - 586
Target Start/End: Complemental strand, 49218976 - 49218728
Alignment:
Q  344 aaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaat-aatgccgatgcccaacatggcagcgtcataagtcgcaa 442  Q
    |||||||| |||||||  |||||| |||| ||| ||||||||| |||||||||| |||    |||||||||||||| ||||||||||  ||| |||||||    
T  49218976 aaaggctacgccatggtaggatgacggatgtttaacaaccattgcagtcaatttatgattggaatgccgatgcccaccatggcagcgctatatgtcgcaa 49218877  T
Q  443 ctctgcagtcaaacttactttgtattttaatccaacttgaaagttaata-----tgaagtaaataaggcatatggcatatgaattgattaatgatatgtg 537  Q
     || || ||||| | || |||| ||||| || ||||||||||| | |||     ||||||||||||||||||| || ||||||||||||||||||||||     
T  49218876 ttcagctgtcaagcataatttgaatttttattcaacttgaaagctgatatgaagtgaagtaaataaggcatatagcttatgaattgattaatgatatgta 49218777  T
Q  538 tttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 586  Q
    ||||  |||||||||||||  || |||||||||||||||||||| ||||    
T  49218776 tttggggtatgataactcatataagtttaacttgataatatgtgcacct 49218728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 49219121 - 49219072
Alignment:
Q  277 ttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatg 326  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49219121 ttctttttgtttcaagatttacttctctaagaaatttcctttttaaaatg 49219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 33160578 - 33160474
Alignment:
Q  230 tttgctagtattctgaaattgctatgctgaagttt----gaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaat 325  Q
    |||||||||||| ||||| ||||||||| ||||||    ||||  |||||||| |||||| || || |||||||||||| ||||||| | ||||||||||    
T  33160578 tttgctagtattatgaaagtgctatgctcaagtttcattgaactttgtaagttgtttttgctttaagatttacttctctgagaaattacttttttaaaat 33160479  T
Q  326 gtcaa 330  Q
    |||||    
T  33160478 gtcaa 33160474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 19468553 - 19468609
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaatta 87  Q
    |||||||||||||| |||| ||||||||||||||| |||||||| |||||| |||||    
T  19468553 gttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttggaatta 19468609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 9581110 - 9581064
Alignment:
Q  35 atgatgaaactctttctgtgatctcaaagaattgttgtgggcttttg 81  Q
    |||||||||| |||| ||||||||||||||||||| |||| ||||||    
T  9581110 atgatgaaacgctttatgtgatctcaaagaattgtcgtggacttttg 9581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 7554458 - 7554393
Alignment:
Q  106 aatgtcacaggaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    |||||||||| |||||| ||| | |||||||||||||||||||| | | | | |||||||||||||    
T  7554458 aatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 27922553 - 27922412
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||| | |||| | |||||||||||| |||||||||||||||| ||||   |||||| ||||||||  || |||||   ||||| ||| | |    
T  27922553 gttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaacc 27922454  T
Q  131 atgtggtagaaaactgcacacaattgagagagattaatttgg 172  Q
    ||||||||||||||||||| ||| ||||| |||||| |||||    
T  27922453 atgtggtagaaaactgcactcaactgagaaagattagtttgg 27922412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 32151345 - 32151293
Alignment:
Q  32 ttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 84  Q
    ||||||||||||| || | |||||||||||||| |||| ||||||||||||||    
T  32151345 ttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaa 32151293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 21235504 - 21235463
Alignment:
Q  130 catgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  21235504 catgtggtagaaaactgcacacaactgagggagatcaatttg 21235463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 13470774 - 13470907
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||||||||  ||| ||||| |||| || | | |||||||||||||||||||||||||||||||| ||  ||||||   |||| | |||||||||| |     
T  13470774 tcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaag 13470873  T
Q  119 agggtgtggaacatgtggtagaaaactgcacaca 152  Q
    |||| ||| ||||||||||||| |||||||||||    
T  13470874 agggagtgaaacatgtggtagagaactgcacaca 13470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 51113823 - 51113974
Alignment:
Q  19 tcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaa 118  Q
    ||||||||||  |||||||||||||| || | ||||||||| |||| ||||||||||||||||||| |   |||  | |||||| |  |||||||||  |    
T  51113823 tcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagaga 51113922  T
Q  119 agggtgtggaacatgtggtagaaaactgcacacaattgagagagattaattt 170  Q
    |||| ||| | |||||||||||||| |||||| || | ||||||||||||||    
T  51113923 agggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaattt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 51764494 - 51764624
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagga-aagggtgtggaa 129  Q
    ||||||||| |||| || | || |||||||||||||||||| |||||||||||| ||  ||| ||  ||||| | ||||||| |||| ||||| ||| ||    
T  51764494 gttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtca-aggagaagggagtgaaa 51764592  T
Q  130 catgtggtagaaaactgcacacaattgagaga 161  Q
    |||||||| |||||||||||||||||||||||    
T  51764593 catgtggttgaaaactgcacacaattgagaga 51764624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 51120939 - 51121076
Alignment:
Q  23 atacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaaggg 122  Q
    ||||||| |||||||||||||  || | ||| |||||||||| |||| ||||||||||||||||    || || |  |||    ||||||||  ||| ||    
T  51120939 atacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaagg 51121038  T
Q  123 tgtggaacatgtggtagaaaactgcacacaattgagag 160  Q
     ||| |||||||||||||||||||||||||||||||||    
T  51121039 agtgaaacatgtggtagaaaactgcacacaattgagag 51121076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 20478136 - 20478267
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||| |||||  | ||||||||||||| |||||||||||||||||||||| ||| |||  | |||||  | |||||||||   || || | | |||    
T  20478136 gttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaaatactactgaaaaattgcgataatgtcacaatgaaaggagcgaaac 20478235  T
Q  131 atgtggtagaaaactgcacacaattgagagag 162  Q
    |||| |||||||||||||||||| ||||||||    
T  20478236 atgtcgtagaaaactgcacacaactgagagag 20478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 41901589 - 41901729
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||| | |||| | |||||||||||| ||||||||| |||||| ||||   |||| |  |||||||  ||||||||   ||||| ||| | |    
T  41901589 gttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagc 41901688  T
Q  131 atgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    |||||||||||||||| || ||||||||| |||||| ||||    
T  41901689 atgtggtagaaaactgtacgcaattgagaaagattagtttg 41901729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 32267520 - 32267381
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||| | |||| | |||||||||||| |||||||||||||||| ||||   |||| | ||||||||  || |||||   ||||| ||| | |    
T  32267520 gttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagc 32267421  T
Q  131 atgtggtagaaaactgcacacaattgagagagattaattt 170  Q
    |||| |||||||||||||| ||| | ||| ||||||||||    
T  32267420 atgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 21834436 - 21834569
Alignment:
Q  107 atgtcacaggaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaact 206  Q
    |||||||||  |||||  || ||||| |||||||||  || |||||| ||||||| ||||||||||||||| |  || ||||||||||||| ||| || |    
T  21834436 atgtcacagagaagggaatgaaacatatggtagaaagatgtacacaactgagagaaattaatttgggggatttgcatttaagtgacgaaaagaggaaatt 21834535  T
Q  207 tctcttgcgtcgtggatgccgtatttgctagtat 240  Q
      ||| |||||||||||||| | |||||||||||    
T  21834536 cttctcgcgtcgtggatgccttctttgctagtat 21834569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 546954 - 546819
Alignment:
Q  35 atgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgt 134  Q
    |||||||||| || | |||||||||||||| |||||||||||||||| ||||   ||| ||  | |||    |||||||||  ||||| ||| |||||||    
T  546954 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgt 546855  T
Q  135 ggtagaaaactgcacacaattgagagagattaattt 170  Q
    | |||||||||||||| || | |||||||| |||||    
T  546854 gctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 55908782 - 55908904
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||| ||| |    || || |||||| |  | |||||||  || |||||| |||    
T  55908782 gttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaac 55908881  T
Q  131 atgtggtagaaaactgcacacaa 153  Q
    |||| || |||||||||||||||    
T  55908882 atgtagtcgaaaactgcacacaa 55908904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 566239 - 566182
Alignment:
Q  26 caagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgca 83  Q
    ||||||||||||||||||| || | ||||||||||||| | ||| |||||||||||||    
T  566239 caagcgttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttgca 566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 1548470 - 1548619
Alignment:
Q  23 atacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaaggg 122  Q
    |||||||  ||||||||||||| ||   |||||||||||||| |||||||||||||||||| ||   ||   |   |||||||||| ||||||  |||||    
T  1548470 atacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaaggg 1548569  T
Q  123 tgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgg 172  Q
     ||| ||||| | | |||||||||| | ||| ||||||| ||||||||||    
T  1548570 agtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 1548619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 1524637 - 1524677
Alignment:
Q  131 atgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  1524637 atgtgatagaaaactgcacacaactgagagagattaatttg 1524677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 53761842 - 53761945
Alignment:
Q  49 tctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaacatgtggtagaaaactgca 148  Q
    ||||||||||| ||||||||| |||||||||||||| ||  |||  |  ||||| | |||||||| |  ||||| ||| ||||||||| |||||||||||    
T  53761842 tctgtgatctcgaagaattgtcgtgggcttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgca 53761940  T
Q  149 cacaa 153  Q
    |||||    
T  53761941 cacaa 53761945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 553425 - 553380
Alignment:
Q  130 catgtggtagaaaactgcacacaattgagagagattaatttggggg 175  Q
    |||||||||||||||||||||||| | ||||||||  |||||||||    
T  553425 catgtggtagaaaactgcacacaacttagagagatcgatttggggg 553380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 570297 - 570256
Alignment:
Q  130 catgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  570297 catgtggtagaaaactgcacacaactgagggagatcaatttg 570256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 553531 - 553471
Alignment:
Q  24 tacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 84  Q
    |||||| |||||||||||| | |||  |||||| ||||||| ||||| |||||||||||||    
T  553531 tacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaa 553471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 1524533 - 1524593
Alignment:
Q  24 tacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 84  Q
    |||||| |||||||||||||| || | | |||||||| ||| |||| ||||||||||||||    
T  1524533 tacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaa 1524593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 8187137 - 8187197
Alignment:
Q  23 atacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgca 83  Q
    ||||||| ||||||||| |||| |||| ||  || ||||||| ||||||||||||||||||    
T  8187137 atacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggcttttgca 8187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 45245139 - 45245279
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||||| ||   |||||||||||||| |||| |||||||||||||| ||  | |  | || ||| |  |||||||||  ||||| ||| |||    
T  45245139 gttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaac 45245238  T
Q  131 atgtggtagaaaactgcacacaattgagagagattaatttg 171  Q
    ||||||||||||| ||||||||| | | |||||| ||||||    
T  45245239 atgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 1037718 - 1037840
Alignment:
Q  31 gttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacaggaaagggtgtggaac 130  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||| ||| |    || || |||||| |  | |||||||  || |||||| |||    
T  1037718 gttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaac 1037817  T
Q  131 atgtggtagaaaactgcacacaa 153  Q
    |||| || |||||||||||||||    
T  1037818 atgtagtcgaaaactgcacacaa 1037840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 39225 - 39177
Alignment:
Q  35 atgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgca 83  Q
    |||||||||| |||| |||||||||||||| |||| |||||||||||||    
T  39225 atgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgca 39177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University