View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11815_low_3 (Length: 478)

Name: NF11815_low_3
Description: NF11815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11815_low_3
NF11815_low_3
[»] chr4 (2 HSPs)
chr4 (14-468)||(24215908-24216368)
chr4 (281-459)||(16841323-16841501)
[»] chr5 (14 HSPs)
chr5 (281-463)||(37698327-37698509)
chr5 (268-444)||(37391372-37391548)
chr5 (245-445)||(37534652-37534853)
chr5 (281-450)||(37641428-37641597)
chr5 (281-451)||(37595876-37596049)
chr5 (293-452)||(37704213-37704372)
chr5 (268-451)||(37713170-37713353)
chr5 (281-435)||(37411750-37411904)
chr5 (281-451)||(37437247-37437417)
chr5 (323-444)||(37399289-37399410)
chr5 (320-444)||(37380806-37380930)
chr5 (321-464)||(37430290-37430433)
chr5 (245-458)||(37441485-37441689)
chr5 (331-450)||(37825460-37825579)
[»] chr3 (1 HSPs)
chr3 (245-441)||(14554615-14554809)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 24215908 - 24216368
Alignment:
Q  14 taaagttggtacagaaaaatcttcttaatggagtgctccatgc---------ttttgnnnnnnngcatccattactacaaaacaagagcacgccaagaca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||       ||||||||||||||||||||||||||||||||||||    
T  24215908 taaagttggtacagaaaaatcttcttaatggagtgctccatgcgctccatgcttttgaaaaaaagcatccattactacaaaacaagagcacgccaagaca 24216007  T
Q  105 ttttagtnnnnnnnnnnngagcatgccaagactcaatttgcaaacaactcttactcttactagtcaaacttttcaggtcatgtttcttatacaaataagg 204  Q
    |||||||           ||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  24216008 ttttagtaaaaaaaaaa-gagcatgc--agactcaatttgcaaacaactcttactcttacaagtcaaacatttcaggtcatgtttcttatacaaataagg 24216104  T
Q  205 actaatcaattggcagatccaaaatcatcaagtnnnnnnngaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttatt 304  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24216105 actaatcaattggcagatccaaaatcatcaagtaaaaaaagaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttatt 24216204  T
Q  305 ctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcat 404  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24216205 ctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcat 24216304  T
Q  405 tgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctctgtg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24216305 tgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtg 24216368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 459
Target Start/End: Original strand, 16841323 - 16841501
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 380  Q
    ||||| ||||| |||||||||||| |  |||||  |||  || |||||| |||| |  ||||| |||||||||| ||||||||  ||||||  |||||||    
T  16841323 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 16841422  T
Q  381 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttg 459  Q
    ||||||| |||||||| ||||| |||||||| ||||| |||||||||  |||||||||||||||| |||  ||||||||    
T  16841423 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatttg 16841501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 281 - 463
Target Start/End: Complemental strand, 37698509 - 37698327
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 380  Q
    ||||| ||||| ||||||||||||||| ||||| ||||  |||||||||  ||| ||||| |||||||||||||||||||||| |||||   |||||| |    
T  37698509 ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattat 37698410  T
Q  381 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtct 463  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||   || |||||||| ||| |||| ||||||||||||    
T  37698409 gcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtct 37698327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 268 - 444
Target Start/End: Original strand, 37391372 - 37391548
Alignment:
Q  268 taagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttac 367  Q
    |||||||  ||| ||||| ||||| ||||| |||||| || ||||| |||| |||||||||| |||||||||| |||||||||||||||||||||| ||     
T  37391372 taagtgtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctat 37391471  T
Q  368 acttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 444  Q
    |||  |||||| ||||||| |||||| || ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  37391472 actctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 245 - 445
Target Start/End: Complemental strand, 37534853 - 37534652
Alignment:
Q  245 gaaagaatattgagaagagagtgt-aagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctg 343  Q
    |||| |||| |||||||||||| | ||||||  ||| ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||| ||||| ||    
T  37534853 gaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttg 37534754  T
Q  344 ttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcat 443  Q
    ||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  ||||| ||||||||    
T  37534753 ttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcat 37534654  T
Q  444 ct 445  Q
    ||    
T  37534653 ct 37534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 450
Target Start/End: Complemental strand, 37641597 - 37641428
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 380  Q
    ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||  ||||| ||||| |||||||||||||||| ||||||| |||| | |    
T  37641597 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgt 37641498  T
Q  381 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacc 450  Q
    ||||||| |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| ||||    
T  37641497 gcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37641428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 451
Target Start/End: Complemental strand, 37596049 - 37595876
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgct---tactcattttacttcttacacttactcat 377  Q
    ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  ||| ||||| |||||||   ||||||||||||||| ||||||| |||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  378 tctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 451  Q
    | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| |||||    
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc 37595876  T

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Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 293 - 452
Target Start/End: Complemental strand, 37704372 - 37704213
Alignment:
Q  293 tccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 392  Q
    ||||||||||||||| ||||| |||| || ||||||| |||| ||||  || ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  37704372 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 37704273  T
Q  393 acagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccg 452  Q
    | || || || ||||||||||||||  ||||||||  |||||||||||||||| ||||||    
T  37704272 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccg 37704213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 268 - 451
Target Start/End: Complemental strand, 37713353 - 37713170
Alignment:
Q  268 taagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttac 367  Q
    |||||||  ||| ||||| ||||| ||||||||||||| | ||||| |||| ||||||||||  |||  |||| ||||||||||||||||||||||  ||    
T  37713353 taagtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccac 37713254  T
Q  368 acttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 451  Q
    |||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||||||||||||| |||||    
T  37713253 actttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc 37713170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 435
Target Start/End: Original strand, 37411750 - 37411904
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 380  Q
    ||||| ||||| |||| |||| ||||| || |  |||| |||||||||| |||| |||||||| || |||||||||||||||| ||||| | |||||| |    
T  37411750 ctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattat 37411849  T
Q  381 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 435  Q
    ||||| |||||||||| | ||| ||||||||||||||||||| | || |||||||    
T  37411850 gcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaa 37411904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 451
Target Start/End: Complemental strand, 37437417 - 37437247
Alignment:
Q  281 ctctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattct 380  Q
    ||||| ||||| ||||||||||||||  |||||  |||  || |||||| ||||  |||| ||||||||||||| |||||| |  |||||| |||||| |    
T  37437417 ctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 37437318  T
Q  381 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaaccc 451  Q
    |||||||||||||||  ||||| || ||||||||||| ||||| ||| || |||||||||||||| |||||    
T  37437317 gcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaaccc 37437247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 444
Target Start/End: Original strand, 37399289 - 37399410
Alignment:
Q  323 tttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaact 422  Q
    ||||||| |||| ||||| ||||| |||||||||||||||| ||||||| |||| | ||||||||||||||||  ||||| |||||||||||||| || |    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt 37399388  T
Q  423 catttgttgtcaacacttcatc 444  Q
    ||||| ||||  ||||||||||    
T  37399389 cattttttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 444
Target Start/End: Original strand, 37380806 - 37380930
Alignment:
Q  320 acctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaaga 419  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||  |||||| |||||| |||||||| ||||| |  ||||| |||||||| ||||| |    
T  37380806 acctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaa 37380905  T
Q  420 actcatttgttgtcaacacttcatc 444  Q
    ||||||||  | |||||||||||||    
T  37380906 actcattttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 464
Target Start/End: Complemental strand, 37430433 - 37430290
Alignment:
Q  321 cctttcactcgttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaa 420  Q
    ||||||||| |||| ||||| || |||| |||| ||||||||| || || |  ||| | ||||| ||||||||||||||||| |||||||||||||||||    
T  37430433 cctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaa 37430334  T
Q  421 ctcatttgttgtcaacacttcatctgaacccgatatttggtctc 464  Q
     |||||| || |||||||||||||| |||| | | |||||||||    
T  37430333 ttcattttttatcaacacttcatctcaacctggtttttggtctc 37430290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 458
Target Start/End: Complemental strand, 37441689 - 37441485
Alignment:
Q  245 gaaagaatattgagaagagagtgtaagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctgt 344  Q
    |||||||||||||||||| ||||||||| |      ||||| |||||| ||||||||||| || ||||| |||| |||||||||  |||| | ||| ||     
T  37441689 gaaagaatattgagaagaaagtgtaagtat------ctctaaatgggt-ccttttttattttattgccttattttacctttcacatgttcttcttgttgc 37441597  T
Q  345 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 444  Q
    ||||||||||||||||||| || |||| |||| | || ||| | |||||||  ||||| |||||||||||||| |||||  ||   ||||||||||||||    
T  37441596 tgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T
Q  445 tgaacccgatattt 458  Q
      ||||||||||||    
T  37441498 gaaacccgatattt 37441485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 450
Target Start/End: Complemental strand, 37825579 - 37825460
Alignment:
Q  331 gttcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgtt 430  Q
    |||| ||||| ||||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |    
T  37825579 gttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttct 37825480  T
Q  431 gtcaacacttcatctgaacc 450  Q
    ||||||||||||||| ||||    
T  37825479 gtcaacacttcatctaaacc 37825460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 245 - 441
Target Start/End: Complemental strand, 14554809 - 14554615
Alignment:
Q  245 gaaagaatattgagaagagagtgt-aagtgttggttactctatatgggttccttttttattctaatgcctcatttgacctttcactcgttcatgttgctg 343  Q
    ||||||||| |||||||||||| | ||||||  ||| ||||| ||||| ||||||||||||||| ||||| |||| ||||||||||  ||| | |||       
T  14554809 gaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttcttattg--- 14554713  T
Q  344 ttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttc 441  Q
    |||||||||||||||||||| || |||| |||||| |||||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||||||||    
T  14554712 ttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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