View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_11 (Length: 311)
Name: NF11816_high_11
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 35416076 - 35416360
Alignment:
| Q |
10 |
agaagaatatatgagataggctacaaattgagttctctctgcaatggagccgctggtgataccggcagcggcgatggcgaaggcccactggtagaggaaa |
109 |
Q |
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| T |
35416076 |
agaagaatatatgagataggcgacaaattgagttctctctgcaatggagccgctggtgataccggcagcagcgatggcgaaggcccactggtagaggaag |
35416175 |
T |
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| Q |
110 |
aagctatagtcacctgaaggtgaagggtaatcccttagaccgaaaaagtggcggccgatgaagccgttggagggtgctccaaaggcgaaagcaaagccga |
209 |
Q |
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| T |
35416176 |
aagctgtagtcaccggaaggtgaaggataatcccttagaccgaaaaagtggcggccaatgaagccgttggagggtgctccaaaggcgaaagcaaagccga |
35416275 |
T |
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| Q |
210 |
agagatagtaggagaggccaccagctgcagcgtcgaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagcc |
294 |
Q |
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| T |
35416276 |
agagatagtaggagaggccaccggctgcagcgtcaaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagcc |
35416360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 17091254 - 17091348
Alignment:
| Q |
182 |
ggtgctccaaaggcgaaagcaaagccgaagagatagtaggagaggccaccagctgcagcgtcgaggacattggtgagcatgatgttcatagtgtt |
276 |
Q |
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| T |
17091254 |
ggtgttccgaaggcaaaggcaaaaccgaagagatagtagaaaacaccgccagcagcggcgtcgagaacatttgtgagcatgatgttcatggtgtt |
17091348 |
T |
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