View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_18 (Length: 249)
Name: NF11816_high_18
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27217789 - 27217688
Alignment:
| Q |
1 |
ctaagtaccagtcttgcactttaaaaggaaatagatatgtatgatctggtttcaaaccaattctagagttatatacattatcattgataatcaaatagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27217789 |
ctaagtaccagtcttgcactttaaaaggaaatagatatgtatgacccggtaccaaaccaattctagagttatatacattatcattgataatcaaatagac |
27217690 |
T |
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| Q |
101 |
tc |
102 |
Q |
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|| |
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| T |
27217689 |
tc |
27217688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26814841 - 26814731
Alignment:
| Q |
1 |
ctaagtaccagtcttgcactttaaaaggaaatagatatgtatgatctggtttcaaaccaattctagagttatatacattatcattgataatcaaatagac |
100 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||| | |||| |||||| || | | |||||||||| || |||||||||||||||| ||| |
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| T |
26814841 |
ctaagtaccagtcttgcacattaaagggaaatagatatgtatgacccggttccaaacctataccacagttatatacgttttcattgataatcaaatggac |
26814742 |
T |
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| Q |
101 |
tcctatcgaat |
111 |
Q |
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|| |||||||| |
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| T |
26814741 |
tcttatcgaat |
26814731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 26814684 - 26814616
Alignment:
| Q |
170 |
cactctggaagaaaataagagaactaaggaagggaagtagttacggaacgaaaaggaaatcgattctct |
238 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
26814684 |
cactctggaagaaaataagaaaactaaggaagggaagttgttacggaacgaaaaagaaatcgattctct |
26814616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 27217655 - 27217598
Alignment:
| Q |
177 |
gaagaaaataagagaactaaggaagggaagtagttacggaacgaaaaggaaatcgatt |
234 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||||||| ||||| |||| |
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| T |
27217655 |
gaagaaaataagaaaactaaggaagggaggttgttacggaacgaaaaagaaattgatt |
27217598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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