View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_2 (Length: 623)
Name: NF11816_high_2
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 55221 - 55825
Alignment:
| Q |
1 |
tgaagttgaggaagctaaggacagctagtaaccaatagaaaaggtcaagtttgtctttgttcagattgttgtcatgaagccaaccaccaccaccactaga |
100 |
Q |
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| T |
55221 |
tgaagttgaggaagctaaggacagctagtaaccaatagaaaaggtcaagtttgtctttgttcagattgttgtcatgaagccaaccaccaccaccactaga |
55320 |
T |
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| Q |
101 |
agttgaagtgattttattcaccaaagaaaccaatagtgagctgagataaaatccaaatgaataggagcaatatgtgatggcagtgaagaatgtctgcatc |
200 |
Q |
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| T |
55321 |
agttgaagtgattttattcaccaaagaaaccaatagtgagctgagataaaatccaaatgaataggagcaatatgtgatggcagtgaagaatgtctgcatc |
55420 |
T |
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| Q |
201 |
cctttcaaggactgtttgtagaagaactcaatgaggccaactgcagtaaacatctctgacaaaccaaatattatgaattgtggtgtaatccaaaatatgg |
300 |
Q |
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| T |
55421 |
cctttcaaggactgtttgtagaagaactcaatgaggccaactgcagtaaacatctctgacaaaccaaatattatgaattgtggtgtaatccaaaatatgg |
55520 |
T |
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| Q |
301 |
acagagtttggttcaggttcacagctgcatcccttctctttttctccataacagctgctgaaaccatagaaaatgtagccagaaaaaggccaatccctat |
400 |
Q |
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| T |
55521 |
acagagtttggttcaggttcacagctgcatcccttctctttttctccataacagctgctgaaaccatagaaaatgtagccagaaaaaggccaatccctat |
55620 |
T |
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| Q |
401 |
tctctgcaaaggtgagattcctgactcatgacctgttatttttcttgcaaagggaacaaataaagtatcatagagagggactacaacgatgagaaaaatg |
500 |
Q |
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| T |
55621 |
tctctgcaaaggtgagattcctgactcatgacctgttatttttcttgcaaagggaacaaataaagtatcatagagagggactacaacgatgagaaaaatg |
55720 |
T |
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| Q |
501 |
taaggaattgactgaagtgatgctggagggatatgaaatgattttgtgacatgtgtgtccatggcacttccttgctggaccgagaatgtttgaagttgtg |
600 |
Q |
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| T |
55721 |
taaggaattgactgaagtgatgctggagggatatgaaatgattttgtgacatgtgtgtccatggcacttccttgctggaccgagaatgtttgaagttgtg |
55820 |
T |
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| Q |
601 |
ctaag |
605 |
Q |
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| T |
55821 |
ctaag |
55825 |
T |
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