View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11816_high_21 (Length: 241)
Name: NF11816_high_21
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 47211866 - 47212012
Alignment:
| Q |
17 |
cacggacaacattgaacccgagttcttagagttagtagaagcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47211866 |
cacggacaacattgaacccgagttcttagagttagtagaagcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataac |
47211965 |
T |
|
| Q |
117 |
cgacctcaacttgtcatttccattgccctaatggtttgtactaatct |
163 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47211966 |
cgacctcaacttgtcatttccattgctctaatggtttgtactaatct |
47212012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 47212051 - 47212125
Alignment:
| Q |
163 |
tcatggttgcaatcgcttaacaattcttgttttatatatagagaattgtagtcaaatacgtttaaaagttaaaaccgcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212051 |
tcatggttgcaatcgcttaacaattcttgttttata----gagaattgtagtcaaatacgtttaaaagttaaaaccgcc |
47212125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 749216 - 749098
Alignment:
| Q |
21 |
gacaacattgaacccgagttcttagag-ttagtagaagcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccga |
119 |
Q |
| |
|
||||||||||||||||||||||| ||| || || || ||||||||||||||||||||||| || || || || || ||||| ||||| ||||| |||||| |
|
|
| T |
749216 |
gacaacattgaacccgagttcttggagctttgt-gaggcaagtcgtgttgctaaagaggtcaagcacccttttaggaatcttctcaaacgcaagaaccga |
749118 |
T |
|
| Q |
120 |
cctcaacttgtcatttccat |
139 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
749117 |
cctcaacttatcatttccat |
749098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University