View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_22 (Length: 229)
Name: NF11816_high_22
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_22 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 27218019 - 27217789
Alignment:
| Q |
8 |
taatttcatatctgatcgtgagctcttgagatattcatctgatattttatttttgc---------aatcagtgaattgaaaatcatccatgttagtcaaa |
98 |
Q |
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| T |
27218019 |
taatttcataactgaccgtgagctcttgagatattcatctgatattttatttttgcgtaacaaagaatcagtgaattgaaaatcatccatgttagtcaaa |
27217920 |
T |
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| Q |
99 |
tgtttgattacgtggattccactttctacaacagactcttttccccaatcgcaaaacctaacttcagcatgaatccattcatttttcaaaagtgcttcgt |
198 |
Q |
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| T |
27217919 |
tgtttgattacgtggattccactttctacaacatactcttttccccaatcgcaaaacctaacttcagcatgaatccattcatttttcaaaagtgcttcgt |
27217820 |
T |
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| Q |
199 |
ccagcatagatttcaatttttggtattcttc |
229 |
Q |
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| T |
27217819 |
ccagcatagatttcaatttttggtattcttc |
27217789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 26815071 - 26814841
Alignment:
| Q |
8 |
taatttcatatctgatcgtgagctcttgagatattcatctgatattttatttttgca---------atcagtgaattgaaaatcatccatgttagtcaaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26815071 |
taatttcatatctgatcgtgagctcttgagatattcatccgatattctatttttgcataagaaagaatcagtgaattgaaaatcatccatgttagtcaaa |
26814972 |
T |
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| Q |
99 |
tgtttgattacgtggattccactttctacaacagactcttttccccaatcgcaaaacctaacttcagcatgaatccattcatttttcaaaagtgcttcgt |
198 |
Q |
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| T |
26814971 |
tgtttgattacgtggattccactttctacaacatactcttttccccaattgcaaaacctaacttcagcatgaatccattcatttttcaaaagcgcatcgt |
26814872 |
T |
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| Q |
199 |
ccagcatagatttcaatttttggtattcttc |
229 |
Q |
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| T |
26814871 |
caagcattgatttaaatttgtggtattcttc |
26814841 |
T |
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