View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_25 (Length: 216)
Name: NF11816_high_25
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 43483001 - 43482848
Alignment:
| Q |
51 |
aatcaactatttcatgtcgtaccattaaagtgaggtgtagtggtgtgattcgacggaatacatatttgatttgccatttgatgttggtgtcatattagaa |
150 |
Q |
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| T |
43483001 |
aatcaactatttcatgtcgttccattaaagtgaggtgtagtggtgtgatttgacggaatacatatttgatttgccatttgatgttggtgtcatattagaa |
43482902 |
T |
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| Q |
151 |
attaatctcaaataaatatcatgttttaatatatgataacgtacttcatctcat |
204 |
Q |
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| T |
43482901 |
attaatctcaaataaatatcatgttttaatatatgataacgtacttcatatcat |
43482848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 43483063 - 43483029
Alignment:
| Q |
17 |
aagaggtatttagcctatattatctatgaaacata |
51 |
Q |
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| T |
43483063 |
aagaggtatttagcctatattatctatgaaacata |
43483029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 2345385 - 2345427
Alignment:
| Q |
70 |
taccattaaagtgaggtgtagtggtgtgattcgacggaataca |
112 |
Q |
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| T |
2345385 |
taccattaaagtggggtgtagtggagtgatttgacggaataca |
2345427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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