View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_5 (Length: 466)
Name: NF11816_high_5
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 258 - 461
Target Start/End: Complemental strand, 47879820 - 47879617
Alignment:
| Q |
258 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879820 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
47879721 |
T |
|
| Q |
358 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcctttgc |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47879720 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcttttgc |
47879621 |
T |
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| Q |
458 |
ttct |
461 |
Q |
| |
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|||| |
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| T |
47879620 |
ttct |
47879617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 47880060 - 47879853
Alignment:
| Q |
18 |
aaaatgttcacaccatatatagtgtaagctaggcaacaagcacatacgtaccacgttaaaggaagccaaaaacacagtatagtatagtctatctatatgc |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47880060 |
aaaatgctcacaccatatatagtgtaagctaggcaacaagcacatacgtaccacgttaaaggaagccaaaaacacagtatagtatagtctatctatatga |
47879961 |
T |
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| Q |
118 |
accctaactagtagacattaaagaagttgcacattcaactctatttcattgtcaagtacttcctcgtcgctctgatctacttccatgtcttctgcttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47879960 |
accctaactagtagacattaaagaagttgcacattcaactctatttcattgtcaagtacttcctcgtcattctgatctacttccatgtcttctgcttctt |
47879861 |
T |
|
| Q |
218 |
cgtcagtc |
225 |
Q |
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|||||||| |
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| T |
47879860 |
cgtcagtc |
47879853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 451
Target Start/End: Complemental strand, 47879571 - 47879390
Alignment:
| Q |
270 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
369 |
Q |
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||||||| ||| |||| ||||| |||||||||||| ||||||||||||| | ||||||| |||| || || ||||||||||||||| ||||| |
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| T |
47879571 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacaccatttgtatcaattctcatagcct |
47879472 |
T |
|
| Q |
370 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgc |
451 |
Q |
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|| ||||||| | | | || | ||||||| |||||||||| |||||| ||||||||| ||||||| || | ||||||||| |
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| T |
47879471 |
tgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatatgc |
47879390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 439
Target Start/End: Original strand, 47881470 - 47881639
Alignment:
| Q |
270 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
369 |
Q |
| |
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||||||| ||| |||| ||||| || |||||||||||||||||||||| || |||||||||||| |||||| |||||||||||| ||||| |
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| T |
47881470 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccaccagtatcaattctcctagcct |
47881569 |
T |
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| Q |
370 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgc |
439 |
Q |
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|| | || || | | | || | ||||||| ||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
47881570 |
tgaattctttcataacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgc |
47881639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 532620 - 532720
Alignment:
| Q |
279 |
aagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagccttgcaatcct |
378 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||||||||||| | ||||| ||||||| ||||| || ||||||||||||| ||||||| |||||| |
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| T |
532620 |
aagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatcct |
532719 |
T |
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| Q |
379 |
t |
379 |
Q |
| |
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| |
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|
| T |
532720 |
t |
532720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 565207 - 565303
Alignment:
| Q |
283 |
tgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagccttgcaatcctt |
379 |
Q |
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|||| ||||| |||||||||| ||||||||||||||| | |||| ||||||| ||||| || ||||||||||||| ||||||| ||||||| |
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| T |
565207 |
tgttgaatcccaaaattaaatctgtatgccctttaaacaaacccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatcctt |
565303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 26214656 - 26214723
Alignment:
| Q |
269 |
ctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttt |
336 |
Q |
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|||||||| |||| |||||||||| ||||| |||| | ||||||||||||| || ||||||||||||| |
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| T |
26214656 |
ctttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactcttt |
26214723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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