View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_8 (Length: 369)
Name: NF11816_high_8
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 140 - 369
Target Start/End: Complemental strand, 26326958 - 26326729
Alignment:
| Q |
140 |
tgaagtagtgtttatatttggggttattacaatttacatgttctatattctatgtagcatttttcaacattctaaatgtcttgcacaaatgtttttgaac |
239 |
Q |
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| T |
26326958 |
tgaagtaatgtttatatttggggttattacaatttacatgttttatattatatgtagcatttttcaacattctaaatgtcttgcacaaatgtttttgaac |
26326859 |
T |
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| Q |
240 |
aaaataattaataaccaattaaagaaaaagatgaaatatgcaatgttgtgcagtaaatgaatgattacaagctctcttttcacctaattaaaccttatct |
339 |
Q |
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| T |
26326858 |
agaataagtaccaaccaattaaagaaaaagatgaaatatgcaatgttgtgcagtaaatgaataattacaagctctcttttcacc-aaatcaaccttatct |
26326760 |
T |
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| Q |
340 |
ttgattc-aaaatatactttcctttctcaat |
369 |
Q |
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| T |
26326759 |
ttgattcaaaaatatactttcctttctcaat |
26326729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 26327051 - 26327000
Alignment:
| Q |
2 |
aggatataatgtggaggaatttctatatattcatatgcagaaaggtcattta |
53 |
Q |
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| T |
26327051 |
aggatataatctggaggaatttctatatattcatatgcagaaaggtcattta |
26327000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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