View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_high_9 (Length: 330)
Name: NF11816_high_9
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 19477198 - 19476885
Alignment:
| Q |
18 |
ataagaacttctcatatgtgctcaatatat-aaccataaacattttccttttgcattcttaatcaaagaactactttagggatctcaaataacattaatg |
116 |
Q |
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| T |
19477198 |
ataagaacttctcatatgtgctcaatatatcaaccataaacattttccttttgcattcttaatcaaagaactactttagggatctcaaataacattaatg |
19477099 |
T |
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| Q |
117 |
aaaaatgtaacaaaccaaagttacattatcttttctatgtcaaattccatcatcataaggaactgaagtagactcaagccattgatcaccaataataaac |
216 |
Q |
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| T |
19477098 |
aaaaatgtaaaaaaccaaagttacattatcttttctatgtcaaattccatcatcataaggaactgaagtagactcaagccattgatcaccaataataaac |
19476999 |
T |
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| Q |
217 |
tcagaaacactgaaattataagcatcattataatccatcaaatgataaccaacccattcaacacgattatcaatctttgaaccaggtccataattttcat |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19476998 |
tcagaaacactgaaattatatgcatcattataatccatcaaatgataaccaacccattcaacacgattatcaatctttgaaccaggtccataattttcat |
19476899 |
T |
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| Q |
317 |
attcaccataaaac |
330 |
Q |
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|||||||||||||| |
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| T |
19476898 |
attcaccataaaac |
19476885 |
T |
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