View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_1 (Length: 642)
Name: NF11816_low_1
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 244 - 627
Target Start/End: Complemental strand, 10741563 - 10741181
Alignment:
| Q |
244 |
cactcatatactaattatagtggtcacttgtacatacaatttatattatatgtaccgaatattaatcaattgtttatctgtgatgttacctgtacatatg |
343 |
Q |
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| T |
10741563 |
cactcatatactaattataatggtcacttgtacatacagtt-atattatatgtaccgaatattaatcaattgtttatctgtgatgttacctgtacatatg |
10741465 |
T |
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| Q |
344 |
cccaactattgccatttctgaaaattgattgcatgactcccaaacaacaacgagcgcaacaaaacatgaactcatcttctccctcaagcaaattcagccc |
443 |
Q |
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| T |
10741464 |
cccaactattgccatttctgaaaattgattgcatgactcccaaacaacaacgagcgcaacaaaacatgaactcatcttctccctcaagcaaattcagccc |
10741365 |
T |
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| Q |
444 |
cctagcaacaattctcagcgcttcaattgttggcacaaatagagaccccaaacaagcacttccaagattccgagtcaacgctctcagaaagcaaaattgt |
543 |
Q |
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| T |
10741364 |
cctagcaacaattctcagcgcttcaattgttggcacaaatagagaccccaaacaagcacttccaagattccgagtcaacgctctcagaaagcaaaattgt |
10741265 |
T |
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| Q |
544 |
gtgctcgattgcattcctctcaagtaatacaacgcgataaccctactaaccgttatattaacaacattcctcataacctctgtg |
627 |
Q |
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| T |
10741264 |
gtgctagattgcattcctctcaagtaatacaacgcgataaccctactaaccgttatattaacaacattcctcataacctctgtg |
10741181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 10741854 - 10741633
Alignment:
| Q |
18 |
gtaacaatgaggatgcagatacttattgataaattttaagatgtaatagattaaaatgacatcatagaaaaatgtgattttggatgaccatggannnnnn |
117 |
Q |
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| T |
10741854 |
gtaacaatgaggatgcagatacttattgataaattttaagaagtaatagattaaaatgacatcatagtaaaatgtgattttggatgaccatggatttttt |
10741755 |
T |
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| Q |
118 |
nnaaagtcagtgtatagtcactaaactcaacnnnnnnngactcatcgataaattttagagtaaaaaagcgaagctaagaactaacagcaaatttcatttt |
217 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10741754 |
ttaacgtcagtgtatagtcactaaactcaacaaaaaaagactcatcgataaattttagagtaaaaaagcgaagctaagaactaacagcaaatttaatttt |
10741655 |
T |
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| Q |
218 |
tcagaattcttgaatcatttaa |
239 |
Q |
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| T |
10741654 |
tcagaattcttgaatcatttaa |
10741633 |
T |
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