View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_12 (Length: 307)
Name: NF11816_low_12
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_12 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 23458577 - 23458286
Alignment:
| Q |
1 |
ttgaaaataaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataa |
100 |
Q |
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| T |
23458577 |
ttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaatcgagggatgaaattccaatgcaccacaaagctgggtttgataa |
23458478 |
T |
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| Q |
101 |
agccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgttttggatagaaagttt |
200 |
Q |
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| T |
23458477 |
agccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgttttggatagaaagttt |
23458378 |
T |
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| Q |
201 |
accttgatgaaaggtattgcaagggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggtttcattt |
292 |
Q |
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| T |
23458377 |
accttgatgaaaggtactgcaatggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggtttcattt |
23458286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 23462431 - 23462316
Alignment:
| Q |
26 |
aattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttct |
125 |
Q |
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| T |
23462431 |
aattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaagcaaattttagtttca |
23462332 |
T |
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| Q |
126 |
atatctgaaattaaac |
141 |
Q |
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| T |
23462331 |
atatctgaacttaaac |
23462316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 74638 - 74565
Alignment:
| Q |
27 |
attgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataa |
100 |
Q |
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|||||||| ||||| ||| |||||||||| ||| | |||||||||| |||| ||||| |||||||||||||| |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataa |
74565 |
T |
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