View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_17 (Length: 254)
Name: NF11816_low_17
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 23608026 - 23608197
Alignment:
| Q |
67 |
tggtgtatcgtgcatagataaatttagtggtgagaaattgtggtccaagttggacctatactttcatgggtgaaaactaaatggattggcaccctgaaga |
166 |
Q |
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| T |
23608026 |
tggtgtatcgtgcatagataaatcttgtggtgaaaaattgtggtccaagttggacctatagttccatgggtgaaaactaaatggactgaccccctgaaga |
23608125 |
T |
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| Q |
167 |
agaaagaatgtgtgagagtggctgagtttgttggaaaaaattgtttggactttggacaaaattatcccttct |
238 |
Q |
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| T |
23608126 |
agaaagaatgtgtgagagtggctgagtttgtttgaaaaagttgtttggactttggacaaaattatcccttct |
23608197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23607872 - 23607925
Alignment:
| Q |
1 |
tttagttagtagggtcctctttgtgagtttagttgcaacaaaaaatttagtgag |
54 |
Q |
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| T |
23607872 |
tttagttaatagggtcctctttgtgtgtttagttgcaacaaaaaaattggtgag |
23607925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 6814186 - 6814138
Alignment:
| Q |
99 |
agaaattgtggtccaagttggacctatactttcatgggtgaaaactaaa |
147 |
Q |
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| T |
6814186 |
agaaattgtgattcaagttggacctatactttcatgggtgcaaactaaa |
6814138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 19080711 - 19080747
Alignment:
| Q |
203 |
aaaattgtttggactttggacaaaattatcccttctt |
239 |
Q |
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| T |
19080711 |
aaaattgtttggcctttggacaaaattatcccttctt |
19080747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 28945501 - 28945449
Alignment:
| Q |
187 |
gctgagtttgttggaaaaaattgtttggactttggacaaaattatcccttctt |
239 |
Q |
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|||||||||| |||| ||||||||||| |||| ||||||||||||| |||||| |
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| T |
28945501 |
gctgagtttgctggacaaaattgtttgaacttaggacaaaattatctcttctt |
28945449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 12767139 - 12767103
Alignment:
| Q |
203 |
aaaattgtttggactttggacaaaattatcccttctt |
239 |
Q |
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| T |
12767139 |
aaaattgtttggcctttggacaaaattatcccttctt |
12767103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 10229138 - 10229174
Alignment:
| Q |
203 |
aaaattgtttggactttggacaaaattatcccttctt |
239 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
10229138 |
aaaattgtttgacctttggacaaaattatcccttctt |
10229174 |
T |
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