View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_27 (Length: 211)
Name: NF11816_low_27
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_27 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 39265955 - 39265830
Alignment:
| Q |
85 |
ctatgtgaccttttttatatatacattgttctgaattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcaga |
184 |
Q |
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| T |
39265955 |
ctatgtaaccttttttatatatacattgttctgaattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcaga |
39265856 |
T |
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| Q |
185 |
tctatccaaatatgtattgtgttttg |
210 |
Q |
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| T |
39265855 |
tcaatccaaatatgtattgtgttttg |
39265830 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 39265717 - 39265645
Alignment:
| Q |
18 |
atctgtgtgcttcgtcgctagaagaggcagaggaaaaagaattgacatgtgagt--acctaaaatcgtactat |
88 |
Q |
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| T |
39265717 |
atctgtgtgctccgtcgctagaagaggcagaggaaaaagaattgacatgtgagtacacctaaaatcgtactat |
39265645 |
T |
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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 38954978 - 38954879
Alignment:
| Q |
113 |
ttctgaattatcttttgaaagaataggtttgtaagattgatcca--taactgataattttttattgtatgcagatctatccaaatatgtattgtgttttg |
210 |
Q |
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| T |
38954978 |
ttctggattatattttgaaagaataggtttgtaagattgatccagataactaatacttttt-attggatgcagatcaatccaaatatgtattgtgttttg |
38954880 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 38954755 - 38954721
Alignment:
| Q |
32 |
tcgctagaagaggcagaggaaaaagaattgacatg |
66 |
Q |
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| T |
38954755 |
tcgctagaagagacagaggaaaaagaattgacatg |
38954721 |
T |
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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 22964940 - 22965039
Alignment:
| Q |
113 |
ttctgaattatcttttgaaagaataggtttgtaagattgatc--cataactgataattttttattgtatgcagatctatccaaatatgtattgtgttttg |
210 |
Q |
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| T |
22964940 |
ttctggattatattttgaaagaataggtttgtaagattgatctagataactaat-actttttattggatgcagatcaatccaaatatgtattgtgttttg |
22965038 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 22965153 - 22965197
Alignment:
| Q |
22 |
gtgtgcttcgtcgctagaagaggcagaggaaaaagaattgacatg |
66 |
Q |
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| T |
22965153 |
gtgtgctccatcgctagaagaggcagaggaaaaagaattgacatg |
22965197 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 45638518 - 45638447
Alignment:
| Q |
85 |
ctatgtgaccttttttatatatacattgttctgaattatcttttgaaagaataggtttgtaagattgatcca |
156 |
Q |
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| T |
45638518 |
ctatgtaacattttttagatatacgttcttatgaattatcttttgaaataataggtttgtaagattgatcca |
45638447 |
T |
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