View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_4 (Length: 501)
Name: NF11816_low_4
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 3777934 - 3777657
Alignment:
| Q |
13 |
cagactcaaatcgtaagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataa |
112 |
Q |
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| T |
3777934 |
cagactcaaatcctaagccacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataa |
3777835 |
T |
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| Q |
113 |
cttggccattgttttccgaacaaagaatgaatgctattttgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaag |
212 |
Q |
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| T |
3777834 |
cttggccattgttttcagagcaaagaatgaatgctatgttgttagagggactcggagttggtttgaaggtaagatttaatgagattggcatagctgaaag |
3777735 |
T |
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| Q |
213 |
agatgaaattgctaaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaagatct |
290 |
Q |
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| T |
3777734 |
agatgaaattgctaaggtgattagagatctaatgataggtgaagaacgaagtgagattcgacaaagaattgaagatct |
3777657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 3701183 - 3701438
Alignment:
| Q |
35 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
134 |
Q |
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| T |
3701183 |
cttcaaccggtggatttttaacacattgtggttggaattcgacacttgagagtatcgtgttaggagtgccaatgataacatggccattatttggcgagca |
3701282 |
T |
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| Q |
135 |
aagaatgaatgctattttgct---agagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
231 |
Q |
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| T |
3701283 |
aagaatgaatgctgttttgttgacagagggactcaaagtgggtttgaagatcaaatttaatgagaatggcattgcagaaagagtggaaattgctaaggtg |
3701382 |
T |
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| Q |
232 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
287 |
Q |
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| T |
3701383 |
gttaaagatctaatgctcggagaagaacgaagtgagattcgacaaagaattgaaga |
3701438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 3707951 - 3708205
Alignment:
| Q |
36 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
135 |
Q |
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| T |
3707951 |
ttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatcaa |
3708050 |
T |
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| Q |
136 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
232 |
Q |
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| T |
3708051 |
ataatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggcattgcagaaagagaggaaattgctaaggtgg |
3708150 |
T |
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| Q |
233 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
287 |
Q |
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| T |
3708151 |
ttagacatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3708205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 3719459 - 3719714
Alignment:
| Q |
35 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
134 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||||||| || || |
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| T |
3719459 |
cttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatca |
3719558 |
T |
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| Q |
135 |
aagaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
231 |
Q |
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| T |
3719559 |
aagaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggaattgcagaaagagaggaaattgctaaggtg |
3719658 |
T |
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| Q |
232 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
287 |
Q |
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||| ||||||||| | || ||| |||| |||||||||||||||||||||||||| |
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| T |
3719659 |
gttaaggatctaatgctcggagaaaaacggagtgagattcgacaaagaatggaaga |
3719714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 3770244 - 3769990
Alignment:
| Q |
36 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
135 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||||||||| || ||| |
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| T |
3770244 |
ttcaacaggtggatttttaacacattgtggttggaattcaacacttgagagtattgtgtcgggagtgccaatggtaacttggccattgtttggtgatcaa |
3770145 |
T |
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| Q |
136 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
232 |
Q |
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| T |
3770144 |
agaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatgacattgcagaaagagaggaaattgctaaggtgg |
3770045 |
T |
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| Q |
233 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
287 |
Q |
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||| |||||||||| | || |||||||| |||||||||||||||||||| ||||| |
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| T |
3770044 |
ttaaagatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3769990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 33005181 - 33004902
Alignment:
| Q |
11 |
cacagactcaaatcgtaagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgat |
110 |
Q |
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| T |
33005181 |
cacagactcaaatcctaagccacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagagcattgcgtcgggagtgccaatgat |
33005082 |
T |
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| Q |
111 |
aacttggccattgttttccgaacaaagaatgaatgctattttg---ctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagct |
207 |
Q |
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||||||||| |||||| ||| |||||| |||||||||||||| ||||||||||| || ||||||||||||| | ||||||||| |||||| || |
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| T |
33005081 |
aacttggccgttgtttggcgagcaaagattgaatgctattttgttaatagagggactcaaggtgggtttgaaggtaa-aattaatgagagtggcattgca |
33004983 |
T |
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| Q |
208 |
gaaaga-gatgaaattgctaaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
287 |
Q |
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|||||| || |||||||||||||||||||||||| ||||| | ||||||||| | ||||| ||| ||||||||| ||||| |
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| T |
33004982 |
gaaagaggaggaaattgctaaggtgattagagatttaatgcttggtgaagaaaggagtgaaattgaacaaagaattgaaga |
33004902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 3769760 - 3769698
Alignment:
| Q |
419 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattat |
481 |
Q |
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| T |
3769760 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttggtttgttttattat |
3769698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 3777536 - 3777442
Alignment:
| Q |
390 |
ctgtgagtttatttcaatgtgtttaatac---ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattat |
481 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| ||||| | ||||| || | |||||||||| |||||| ||||||| ||||| |
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| T |
3777536 |
ctgtgagtttatttcaatgtgtttattacattttttttcttccttaatgttgatgttgcaccacaatgatacttgaagttggtttgttttattat |
3777442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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