View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11816_low_6 (Length: 420)

Name: NF11816_low_6
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11816_low_6
NF11816_low_6
[»] chr7 (27 HSPs)
chr7 (71-328)||(26899471-26899736)
chr7 (330-410)||(31513289-31513369)
chr7 (330-410)||(40236921-40237001)
chr7 (330-410)||(27535249-27535329)
chr7 (330-406)||(31408655-31408731)
chr7 (328-410)||(4638217-4638299)
chr7 (328-410)||(10573749-10573831)
chr7 (328-410)||(44326178-44326260)
chr7 (330-410)||(33384872-33384953)
chr7 (330-410)||(5194249-5194329)
chr7 (330-410)||(5810942-5811022)
chr7 (330-410)||(24001030-24001110)
chr7 (330-410)||(42538449-42538529)
chr7 (328-410)||(43343642-43343724)
chr7 (328-410)||(44416952-44417034)
chr7 (331-408)||(26898422-26898499)
chr7 (330-395)||(39998410-39998475)
chr7 (330-410)||(35069723-35069803)
chr7 (334-410)||(45326026-45326102)
chr7 (330-410)||(5015397-5015477)
chr7 (330-410)||(24280614-24280694)
chr7 (337-408)||(32029837-32029908)
chr7 (330-385)||(41861676-41861731)
chr7 (328-410)||(16180375-16180456)
chr7 (330-410)||(9216304-9216383)
chr7 (21-53)||(26899449-26899481)
chr7 (330-410)||(43317445-43317525)
[»] chr3 (23 HSPs)
chr3 (317-410)||(25996258-25996350)
chr3 (330-410)||(9434126-9434206)
chr3 (330-410)||(10457910-10457990)
chr3 (330-410)||(4190283-4190363)
chr3 (330-410)||(52627995-52628075)
chr3 (330-410)||(42100690-42100770)
chr3 (330-410)||(45126946-45127026)
chr3 (330-410)||(51757595-51757675)
chr3 (330-410)||(34791831-34791911)
chr3 (330-410)||(40808867-40808947)
chr3 (330-410)||(46941055-46941135)
chr3 (330-410)||(54237098-54237178)
chr3 (330-410)||(24688420-24688500)
chr3 (330-410)||(25413683-25413763)
chr3 (326-410)||(27748561-27748645)
chr3 (330-410)||(36150132-36150212)
chr3 (330-410)||(40480751-40480831)
chr3 (330-410)||(42394437-42394517)
chr3 (330-410)||(54246166-54246246)
chr3 (332-410)||(29558252-29558330)
chr3 (328-410)||(53581876-53581958)
chr3 (319-375)||(1078218-1078274)
chr3 (330-410)||(47191044-47191123)
[»] chr1 (22 HSPs)
chr1 (330-410)||(35003296-35003376)
chr1 (330-410)||(48119630-48119710)
chr1 (317-410)||(44112667-44112759)
chr1 (330-410)||(38113213-38113293)
chr1 (330-410)||(45639750-45639830)
chr1 (330-410)||(38335920-38336000)
chr1 (330-410)||(41065155-41065235)
chr1 (330-410)||(46168385-46168465)
chr1 (330-410)||(45427763-45427843)
chr1 (328-410)||(2497580-2497662)
chr1 (330-406)||(37814780-37814856)
chr1 (330-410)||(43571104-43571184)
chr1 (330-410)||(45705827-45705907)
chr1 (330-375)||(14427349-14427394)
chr1 (330-410)||(5489778-5489858)
chr1 (330-410)||(35000131-35000211)
chr1 (330-409)||(26585464-26585543)
chr1 (330-410)||(23989541-23989622)
chr1 (330-410)||(750323-750403)
chr1 (330-410)||(48498980-48499060)
chr1 (328-410)||(7447826-7447907)
chr1 (330-400)||(24769527-24769597)
[»] chr6 (17 HSPs)
chr6 (330-410)||(33242405-33242485)
chr6 (328-410)||(27441542-27441624)
chr6 (330-410)||(33253915-33253995)
chr6 (328-410)||(24204005-24204087)
chr6 (330-406)||(3213402-3213478)
chr6 (330-410)||(7273353-7273433)
chr6 (330-410)||(13743239-13743319)
chr6 (330-410)||(13748739-13748819)
chr6 (330-410)||(9698351-9698431)
chr6 (330-410)||(26670027-26670107)
chr6 (330-406)||(21293699-21293775)
chr6 (330-410)||(26466801-26466881)
chr6 (330-405)||(31109245-31109320)
chr6 (328-410)||(30735982-30736064)
chr6 (330-410)||(7292749-7292829)
chr6 (330-410)||(21279931-21280011)
chr6 (330-410)||(30014345-30014425)
[»] chr4 (35 HSPs)
chr4 (318-410)||(32728348-32728439)
chr4 (317-410)||(17619170-17619263)
chr4 (330-410)||(711962-712042)
chr4 (330-408)||(960890-960968)
chr4 (328-410)||(3756264-3756346)
chr4 (330-410)||(55272394-55272474)
chr4 (328-410)||(35037005-35037087)
chr4 (330-410)||(28982840-28982920)
chr4 (330-410)||(46827724-46827804)
chr4 (334-410)||(48435597-48435673)
chr4 (330-411)||(28988475-28988556)
chr4 (321-408)||(49229684-49229770)
chr4 (328-410)||(27893860-27893942)
chr4 (361-410)||(19879987-19880036)
chr4 (330-410)||(1771284-1771364)
chr4 (330-410)||(23035982-23036062)
chr4 (330-410)||(27864566-27864646)
chr4 (330-410)||(33703143-33703223)
chr4 (330-410)||(55966364-55966444)
chr4 (328-410)||(38851513-38851595)
chr4 (330-411)||(27316730-27316811)
chr4 (330-410)||(25051695-25051775)
chr4 (325-408)||(27550306-27550389)
chr4 (328-410)||(31680902-31680984)
chr4 (328-410)||(41327561-41327643)
chr4 (328-410)||(43514704-43514786)
chr4 (330-410)||(41878408-41878488)
chr4 (328-410)||(43949819-43949902)
chr4 (330-408)||(12496958-12497036)
chr4 (330-410)||(35017735-35017814)
chr4 (330-410)||(45490331-45490411)
chr4 (330-410)||(48463468-48463548)
chr4 (330-364)||(36004168-36004202)
chr4 (330-407)||(41847973-41848050)
chr4 (370-410)||(36004134-36004174)
[»] chr2 (25 HSPs)
chr2 (326-410)||(11825672-11825756)
chr2 (330-410)||(966852-966932)
chr2 (322-410)||(4299438-4299526)
chr2 (330-410)||(18491707-18491787)
chr2 (330-410)||(43114559-43114639)
chr2 (328-410)||(41281992-41282074)
chr2 (330-410)||(12415478-12415558)
chr2 (330-410)||(12427538-12427618)
chr2 (330-410)||(14285678-14285758)
chr2 (330-410)||(16803970-16804050)
chr2 (330-410)||(16843252-16843332)
chr2 (328-410)||(6518487-6518568)
chr2 (334-410)||(34895759-34895835)
chr2 (330-410)||(1750416-1750496)
chr2 (330-410)||(4764744-4764824)
chr2 (330-410)||(30838634-30838714)
chr2 (330-410)||(34817794-34817874)
chr2 (328-411)||(43490418-43490501)
chr2 (328-408)||(7070416-7070496)
chr2 (330-410)||(12302271-12302351)
chr2 (330-398)||(16096749-16096817)
chr2 (330-410)||(19047159-19047239)
chr2 (328-410)||(8896601-8896683)
chr2 (330-410)||(13780753-13780833)
chr2 (328-407)||(33229301-33229381)
[»] scaffold0003 (1 HSPs)
scaffold0003 (328-410)||(45737-45819)
[»] chr8 (28 HSPs)
chr8 (330-410)||(35181518-35181598)
chr8 (330-410)||(34304790-34304870)
chr8 (330-410)||(16603644-16603724)
chr8 (330-410)||(1375544-1375624)
chr8 (328-410)||(20148760-20148842)
chr8 (330-410)||(18066736-18066816)
chr8 (322-410)||(30912580-30912668)
chr8 (328-410)||(29800968-29801050)
chr8 (328-410)||(33630011-33630093)
chr8 (328-410)||(42295195-42295277)
chr8 (330-410)||(16358851-16358932)
chr8 (330-410)||(5754905-5754985)
chr8 (330-410)||(11582768-11582848)
chr8 (330-410)||(29705364-29705444)
chr8 (330-410)||(36743501-36743581)
chr8 (328-410)||(26125635-26125717)
chr8 (328-410)||(42699257-42699339)
chr8 (370-410)||(10678170-10678210)
chr8 (330-368)||(19386630-19386668)
chr8 (330-408)||(30660762-30660840)
chr8 (336-410)||(31384672-31384746)
chr8 (337-410)||(40528652-40528726)
chr8 (330-411)||(2165980-2166061)
chr8 (330-410)||(42197453-42197533)
chr8 (330-410)||(45397318-45397398)
chr8 (330-410)||(2546998-2547078)
chr8 (328-410)||(3743771-3743853)
chr8 (330-364)||(10678204-10678238)
[»] chr5 (13 HSPs)
chr5 (330-410)||(17208076-17208156)
chr5 (330-410)||(32473412-32473492)
chr5 (330-410)||(7617135-7617215)
chr5 (330-410)||(30622737-30622816)
chr5 (330-406)||(38470581-38470657)
chr5 (328-410)||(5256995-5257077)
chr5 (330-400)||(33855071-33855141)
chr5 (330-410)||(2614667-2614747)
chr5 (330-410)||(22512307-22512387)
chr5 (330-410)||(41334681-41334761)
chr5 (330-410)||(18033984-18034064)
chr5 (317-385)||(25915030-25915098)
chr5 (330-410)||(33801471-33801551)
[»] scaffold0385 (1 HSPs)
scaffold0385 (330-410)||(11253-11333)
[»] scaffold0100 (1 HSPs)
scaffold0100 (330-410)||(35474-35554)
[»] scaffold0119 (1 HSPs)
scaffold0119 (330-410)||(687-767)
[»] scaffold0038 (1 HSPs)
scaffold0038 (330-410)||(112657-112737)
[»] scaffold0187 (2 HSPs)
scaffold0187 (330-410)||(14206-14286)
scaffold0187 (330-410)||(24534-24614)
[»] scaffold0157 (1 HSPs)
scaffold0157 (330-408)||(23441-23519)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 71 - 328
Target Start/End: Original strand, 26899471 - 26899736
Alignment:
Q  71 actagaataataaatgtgtaagtaataaatatttgcacaacgctctatt-----ttatcaactcttct---atatcacactttcggccgcaagttactat 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||   |||||||||||||||||||||||||||      
T  26899471 actagaataataaatgtgtaagtaataaatatttgcacaacgctctattatattttatcaactcttcttctatatcacactttcggccgcaagttactca 26899570  T
Q  163 tgaataaatcaattagaatatttaataatttgtgcttcaagatgtgnnnnnnngtgtgacgtgcgtaacacaggtgcaaaaactacttccattaagatat 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||| |||||||||||||||||||||||||||    
T  26899571 tgaattaatcaattagaatatttaataatttgtgcttcaagatgtgtttttttgtgtgaagtgcgtaacacaagtgcaaaaactacttccattaagatat 26899670  T
Q  263 ttaacacagctgcattttatgagagctacaagaaatctcttactatttcatccaatttattttagg 328  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26899671 taaaaacagctgcattttatgagagctacaagaaatctcttactatttcatccaatttattttagg 26899736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 31513289 - 31513369
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||||    
T  31513289 aaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctca 31513369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 40236921 - 40237001
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||| |||||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctca 40237001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 27535329 - 27535249
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| ||||||||||||| |||||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctca 27535249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 31408731 - 31408655
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcat 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||  |||||||| ||||||||||||||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcat 31408655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 4638299 - 4638217
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||| |||| |||||||| | |||||||||||||||||||| ||| |||||||||| |||||||||    
T  4638299 gaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctca 4638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 10573749 - 10573831
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctca 10573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 44326178 - 44326260
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| ||||||||||| ||||||| || |||||||||| ||||||||| ||| |||||||||| |||||||||    
T  44326178 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 44326260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 33384872 - 33384953
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccc-tattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| || ||||  |||| ||||||||||||||||||||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctca 33384953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 5194329 - 5194249
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||| || | ||||||| |||||| |||||||||||||    
T  5194329 aaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctca 5194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 5811022 - 5810942
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| ||||||||| || ||||||| ||||||||||| |||||||| ||| |||||| ||| |||||||||    
T  5811022 aaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctca 5810942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 24001110 - 24001030
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 24001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 42538529 - 42538449
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 42538449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 43343724 - 43343642
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| | |||| |  |||||||||||||||||||||| ||||| ||| |||||| ||| |||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 43343642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 44417034 - 44416952
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| | |||| |  |||||||||||||||||||||| ||||| ||| |||||| ||| |||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 44416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  331 aaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    |||||||||||||||||| |||| |||||||||| ||||||||  |||| ||||| ||| |||||||||| |||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 39998410 - 39998475
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacatttt 395  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||| ||| |||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 35069723 - 35069803
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 35069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 45326026 - 45326102
Alignment:
Q  334 tgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||| |||||| |||| ||||||| |  |||||||||||||||||||| ||| |||||||||| |||||||||    
T  45326026 tgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctca 45326102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 5015397 - 5015477
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 5015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 24280694 - 24280614
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| ||||||||||||| |||||||||||||| |||| |||||  | ||   | ||||||||||||||||||||    
T  24280694 aaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctca 24280614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 408
Target Start/End: Complemental strand, 32029908 - 32029837
Alignment:
Q  337 tacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    ||||| |||||  |||| || ||||||| |||||||||||||| ||||| ||| ||||||||||||||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatct 32029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 41861676 - 41861731
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatatta 385  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||| || |||||    
T  41861676 aaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtatta 41861731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 16180456 - 16180375
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| |||||| |||| || ||||||| |||||||||||||  |||||   | ||||||||||||||||||||    
T  16180456 gaaaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctca 16180375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 9216304 - 9216383
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || || | ||||||||||| |||||  ||||  || |||||||||| |||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctca 9216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 26899449 - 26899481
Alignment:
Q  21 caatatcttgcaagtaaataacactagaataat 53  Q
    |||||||||||||||||||||||||||||||||    
T  26899449 caatatcttgcaagtaaataacactagaataat 26899481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 43317445 - 43317525
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| |||||||||  |||||||| || ||   ||| ||| |||||| |||||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctca 43317525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 25996258 - 25996350
Alignment:
Q  317 atttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  25996258 atttaatttaggaaaa-tgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctca 25996350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 9434126 - 9434206
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||| |||||||||||||| |||||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 9434206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 10457990 - 10457910
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctca 10457910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 4190363 - 4190283
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||  || ||||||||||||||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctca 4190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 52628075 - 52627995
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||  |||||| | ||||||||||||||||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctca 52627995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 42100690 - 42100770
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||  |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 42100770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 45127026 - 45126946
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 45126946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 51757595 - 51757675
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| |||  |||| ||||||||| |||| |||||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctca 51757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 34791831 - 34791911
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| |||  |||| |||||||||  ||| |||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctca 34791911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 40808867 - 40808947
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||| |||| || ||||||| |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctca 40808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 46941055 - 46941135
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| |  |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctca 46941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 54237098 - 54237178
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 54237178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 24688500 - 24688420
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||| | ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctca 24688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 25413683 - 25413763
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||  || ||||| ||| ||||| |||| |||||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctca 25413763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 27748561 - 27748645
Alignment:
Q  326 aggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||| |||| |||||||||  ||| ||||||  || ||||| ||| |||||||||| |||||||||    
T  27748561 aggaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctca 27748645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 36150132 - 36150212
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||| |||||||| |||||||||| ||| ||||||| || ||| | ||| |||||||||| |||||||||    
T  36150132 aaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctca 36150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 40480751 - 40480831
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |||||  ||| |||||||| || || ||||| ||| |||||||||| |||||||||    
T  40480751 aaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctca 40480831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 42394517 - 42394437
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 42394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 54246246 - 54246166
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||| || |||||  || ||||| |||| |||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctca 54246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 410
Target Start/End: Complemental strand, 29558330 - 29558252
Alignment:
Q  332 aatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||| |||||||||||||| ||||||| |  ||||||||||| |||||||| | | || |||||||||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctca 29558252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 53581958 - 53581876
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||| || || ||||| ||| |||||| ||| |||||||||    
T  53581958 gaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctca 53581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 1078218 - 1078274
Alignment:
Q  319 ttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacacc 375  Q
    |||||||| |||||||||||||||||||||||||| || | ||||  ||||||||||    
T  1078218 ttattttatgaaaaatgttacatgaacaccctttattcctgcacctcattgtacacc 1078274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 47191123 - 47191044
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||  |||||||| ||||| |||||  || |||||| ||| |||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctca 47191044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 35003296 - 35003376
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctca 35003376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 48119630 - 48119710
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 48119710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 44112667 - 44112759
Alignment:
Q  317 atttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  44112667 atttatttaaggaaaa-tgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 44112759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 38113293 - 38113213
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  38113293 aaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctca 38113213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 45639830 - 45639750
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  45639830 aaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctca 45639750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 38335920 - 38336000
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctca 38336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 41065155 - 41065235
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  |||| || ||||||||||| |||||||||    
T  41065155 aaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctca 41065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 46168385 - 46168465
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  46168385 aaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctca 46168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 45427843 - 45427763
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctca 45427763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 2497662 - 2497580
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| |||||| |||| |||||||  | |||||||||||||||||||||||| |||||||||| |||||||||    
T  2497662 gaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctca 2497580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 37814780 - 37814856
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcat 406  Q
    |||||||||||| ||||||||||| ||||||| |  |||||||||||||| ||||||||| ||||||||||||||||    
T  37814780 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcat 37814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 43571184 - 43571104
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||  |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 45705827 - 45705907
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||| ||||  |||| |||||||||| |||||||||||||    
T  45705827 aaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctca 45705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 14427349 - 14427394
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacacc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacc 14427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 5489778 - 5489858
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 5489858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 35000211 - 35000131
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||  ||| ||||| |||||||||| |||||| ||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctca 35000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 26585464 - 26585543
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctc 409  Q
    ||||||||| |||||||  ||||||||||||||  |||||||||||||||  |||||||| ||||| |||||||||||||    
T  26585464 aaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 23989622 - 23989541
Alignment:
Q  330 aaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||| || ||||||| | |||||| |||| || ||||| ||| ||||||||||||| ||||||    
T  23989622 aaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctca 23989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 750403 - 750323
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| |||||||||||   || ||||||| |||||||||||||| ||| | ||| |||||| |||||||||||||    
T  750403 aaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctca 750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 48499060 - 48498980
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 48498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 7447826 - 7447907
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||||| || |||| || |||||||| ||||| |||||  || |||||| ||| |||||||||    
T  7447826 gaaaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctca 7447907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 24769597 - 24769527
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaa 400  Q
    |||||||| |||||||||| |||| |  ||||| | |||||||||||||| ||||| ||| ||||||||||    
T  24769597 aaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaa 24769527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 33242405 - 33242485
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctca 33242485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 27441542 - 27441624
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 27441624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 33253915 - 33253995
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 33253995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 24204087 - 24204005
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||| |||| ||||| ||| |||||||||| |||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctca 24204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 3213402 - 3213478
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcat 406  Q
    |||||||||||| ||||||||||| ||||||| |  |||||||||||||| ||||||||| ||||||||||||||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcat 3213478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 7273433 - 7273353
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||||| |||||  || |||||||||| |||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctca 7273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 13743319 - 13743239
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 13748819 - 13748739
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 9698431 - 9698351
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 9698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 26670107 - 26670027
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 26670027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 21293775 - 21293699
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcat 406  Q
    |||||||||||| ||||||||||| |||||||    | |||||||||||| ||||||||| ||||||||||||||||    
T  21293775 aaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcat 21293699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 26466801 - 26466881
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| ||||||||||| || ||||||| ||||||||| |||| ||||| ||  |||||||||| |||||||||    
T  26466801 aaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctca 26466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 31109320 - 31109245
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattca 405  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||  | || ||| |||||| ||||||||    
T  31109320 aaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 30735982 - 30736064
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||  |||| || ||||||| |||||||||| ||| |||||  || |||||||||| |||||||||    
T  30735982 gaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctca 30736064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 7292749 - 7292829
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||| ||||||| |||| |||||||||  ||| ||||||| || ||||| ||| |||||||||| |||||||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctca 7292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 21279931 - 21280011
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||  | |||| ||| ||||| ||||| ||| ||||||||||||||||||||    
T  21279931 aaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctca 21280011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 30014345 - 30014425
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||| |||| ||||| ||||| | | |||||||||| |||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctca 30014425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 318 - 410
Target Start/End: Original strand, 32728348 - 32728439
Alignment:
Q  318 tttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  32728348 tttattttaggaaaa-tgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctca 32728439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 410
Target Start/End: Complemental strand, 17619263 - 17619170
Alignment:
Q  317 atttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  17619263 atttcttttatggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca 17619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 711962 - 712042
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctca 712042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 960968 - 960890
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 3756346 - 3756264
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| ||||||| ||||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctca 3756264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 55272474 - 55272394
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca 55272394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 35037005 - 35037087
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  35037005 gaaaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca 35037087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 28982920 - 28982840
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  |||||||||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctca 28982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 46827804 - 46827724
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||| || |||||||||||| ||||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctca 46827724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 48435673 - 48435597
Alignment:
Q  334 tgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 48435597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 411
Target Start/End: Original strand, 28988475 - 28988556
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcat 411  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||  | || |||||||||| ||||||||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcat 28988556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 49229770 - 49229684
Alignment:
Q  321 attttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||  |||  |||||||| ||| ||||||||||||||    
T  49229770 attttaggaaaa-tgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 27893942 - 27893860
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  27893942 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 27893860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 19879987 - 19880036
Alignment:
Q  361 accctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctca 19880036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 1771364 - 1771284
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||||| |||||  || |||||| ||| |||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctca 1771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 23035982 - 23036062
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||  |||||| || ||||||||||||||||||| |||||||| ||| ||||| |||| |||||||||    
T  23035982 aaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctca 23036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 27864566 - 27864646
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 27864646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 33703143 - 33703223
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  |||| | ||||||||||||||| ||||| ||| |||||||||| |||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 33703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 55966444 - 55966364
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| ||||||||||| ||||||| || |||||||| ||||| ||||| ||| |||||||||| |||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctca 55966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 38851513 - 38851595
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| | |||||||||||||| | || ||||||| ||||  |||| |||||||||| |||||||||||||    
T  38851513 gaaaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctca 38851595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 411
Target Start/End: Complemental strand, 27316811 - 27316730
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcat 411  Q
    ||||||||| | |||||||||||| || ||||||  ||| |||||||||| ||||||||| |||||||||| ||||||||||    
T  27316811 aaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcat 27316730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 25051695 - 25051775
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||| |||||||||| ||||| || ||||||| ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  25051695 aaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctca 25051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 27550306 - 27550389
Alignment:
Q  325 taggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    |||| |||||||||||||||||||||||| |  ||||| | |||||||||| ||| ||||| ||| |||||||||| |||||||    
T  27550306 tagggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 31680902 - 31680984
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| | |||||| |||| |||||||  | |||||||||||| ||||||| ||| |||||||||| |||||||||    
T  31680902 gaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctca 31680984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 41327643 - 41327561
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||  |||||||||| ||| |||||| ||||||||||  ||  | || ||||||||||||||||||||||||    
T  41327643 gaaaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctca 41327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 43514786 - 43514704
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||| || ||||| | |||||||||  ||| ||||| ||  |||||||||| |||||||||    
T  43514786 gaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctca 43514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 41878408 - 41878488
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||| |||||||||  ||||||||||| ||  |||| ||| |||||| ||| |||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctca 41878488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 43949902 - 43949819
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||| |||||||||||||||| || | | ||||  |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  43949902 gaaaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43949819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 12496958 - 12497036
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    ||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||  || |||||||||| |||||||    
T  12496958 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 35017735 - 35017814
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || || | |  |||||||||||||| || || ||| |||||||||| |||||||||    
T  35017735 aaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctca 35017814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 45490411 - 45490331
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||  |||| | ||||| || |||||||||| ||| ||||| ||| | ||| ||||||||||||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctca 45490331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 48463548 - 48463468
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||| |||| |||||||    |||||||| ||||| ||||| ||| |||||||||| |||||||||    
T  48463548 aaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctca 48463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 36004202 - 36004168
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccc 364  Q
    ||||||||||||||| |||||||||||||||||||    
T  36004202 aaaatgttacatgaataccctttaatcatacaccc 36004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 41847973 - 41848050
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatc 407  Q
    ||||||||||| ||||| |||||  ||| |||||  ||||||||||||||  ||||  |||||||||| |||||||||    
T  41847973 aaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatc 41848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 36004174 - 36004134
Alignment:
Q  370 tacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||| |||||||||| |||||| ||||||    
T  36004174 tacaccccatatattagggacattttgataaatttatctca 36004134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 11825756 - 11825672
Alignment:
Q  326 aggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  11825756 aggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 11825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 966932 - 966852
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctca 966852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 4299526 - 4299438
Alignment:
Q  322 ttttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||    
T  4299526 ttttacgaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctca 4299438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 18491707 - 18491787
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctca 18491787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 43114559 - 43114639
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 43114639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 41282074 - 41281992
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||    
T  41282074 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctca 41281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 12415558 - 12415478
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||| || ||||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12415478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 12427618 - 12427538
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||| || ||||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca 12427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 14285678 - 14285758
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  14285678 aaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 16803970 - 16804050
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||| ||| |||||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16804050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 16843252 - 16843332
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||| ||| |||||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca 16843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 6518568 - 6518487
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||| |||||||||||||| |||||||||    
T  6518568 gaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca 6518487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 34895835 - 34895759
Alignment:
Q  334 tgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  |||| |||||| |||||||||||||||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctca 34895759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 1750416 - 1750496
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||| ||||| |||| |||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 1750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 4764824 - 4764744
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||| |||| || |||||||||||||||||||||| |||||   | ||||||||||||||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctca 4764744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 30838634 - 30838714
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  |||| | ||||||||||||||| ||||| ||| |||||||||| |||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 30838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 34817874 - 34817794
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| ||| |||||  ||||||||||||||  | || | ||||||||||||||||||||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctca 34817794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 43490501 - 43490418
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcat 411  Q
    |||||||||||||||||||||||||| || |||| || ||||||||| | || ||||| ||| |||||||||| ||||||||||    
T  43490501 gaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcat 43490418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 7070416 - 7070496
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    |||||||||||||||||||||||||| ||||||| || ||||||  | |||| ||||  |||||||||| |||||||||||    
T  7070416 gaaaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatct 7070496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 12302351 - 12302271
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||| || ||||| ||| ||||| |||| |||||||||    
T  12302351 aaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 12302271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 16096749 - 16096817
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggt 398  Q
    |||||||||||||||||||||||| || ||||||| ||| |||||||||| ||||| ||| ||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggt 16096817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 19047159 - 19047239
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 19047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 8896683 - 8896601
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||| ||| |||  | ||||||||||| ||| | || | | ||||||||||||||||||||    
T  8896683 gaaaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctca 8896601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 13780833 - 13780753
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||  |||| ||| |||||  ||||||||||||||| |||| ||| |||||| |||||||||||||    
T  13780833 aaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctca 13780753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 33229301 - 33229381
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatc 407  Q
    |||||||| |||||||||||||||| || | ||||||  |||||||||||||| ||||| ||| |||||||||| ||||||    
T  33229301 gaaaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 45819 - 45737
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca 45737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 35181518 - 35181598
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 35181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 34304790 - 34304870
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca 34304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 16603724 - 16603644
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||||||  ||||| |||||||||||||||||||||||    
T  16603724 aaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctca 16603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 1375544 - 1375624
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||    
T  1375544 aaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctca 1375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 20148760 - 20148842
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| ||||||||||| ||||||| || |||||||||| ||||||||| ||| |||||||||| |||||||||    
T  20148760 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 20148842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 18066816 - 18066736
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| ||| ||||| |||| |||||||||    
T  18066816 aaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctca 18066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 30912668 - 30912580
Alignment:
Q  322 ttttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||  ||| ||||| ||  |||||||||| |||||||||    
T  30912668 ttttaggaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctca 30912580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 29801050 - 29800968
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  29801050 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 29800968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 33630093 - 33630011
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||| ||  |||| ||||||||| |||| |||||||||    
T  33630093 gaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctca 33630011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 42295195 - 42295277
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||| |||| ||||| ||| |||||||||| |||||||||    
T  42295195 gaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctca 42295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 16358932 - 16358851
Alignment:
Q  330 aaaatgttacat-gaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||  |||||| | |||||| |||||||||||||    
T  16358932 aaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctca 16358851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 5754905 - 5754985
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| || |||| || |||||||| ||||||||||| ||| |||||||||| |||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctca 5754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 11582768 - 11582848
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 11582848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 29705364 - 29705444
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||||||| ||||| ||| |||||| ||| |||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctca 29705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 36743581 - 36743501
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 36743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 26125635 - 26125717
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| ||||||||||| |||||||  | ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctca 26125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 42699257 - 42699339
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||  || ||||| ||| ||||| |||| |||||||||    
T  42699257 gaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctca 42699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 10678210 - 10678170
Alignment:
Q  370 tacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10678210 tacaccccatatattaaggacattttggtaaattcatctca 10678170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 19386668 - 19386630
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctatt 368  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19386668 aaaatgttacatgaacaccctttaatcatacaccctatt 19386630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 30660840 - 30660762
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    |||||||||||||||||||||||| |  |||| || ||||||||||| || ||||| ||| |||||||||| |||||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 31384672 - 31384746
Alignment:
Q  336 ttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| || ||||  |||||||||||||||| ||||| | | |||||||||| |||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctca 31384746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 410
Target Start/End: Complemental strand, 40528726 - 40528652
Alignment:
Q  337 tacatgaacaccctttaat-catacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||| || || | |||| |||||||||||||||||||| |||||||||| |||||| ||||||    
T  40528726 tacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctca 40528652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 411
Target Start/End: Complemental strand, 2166061 - 2165980
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctcat 411  Q
    ||||| ||||||||||||| |||| || ||||||| |||||| ||||||| |||||  || |||||||||| ||||||||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcat 2165980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 42197533 - 42197453
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||||| |||| || ||||||| |||| |||| | || ||||| ||| |||||||||| |||||||||    
T  42197533 aaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctca 42197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 45397318 - 45397398
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| ||||||||||||| || ||||||| ||| ||||||| || ||||| ||| ||||| |||| |||||||||    
T  45397318 aaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctca 45397398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 2546998 - 2547078
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||| ||||| |  ||||| | |||||||||| ||| ||||| ||| ||||| |||| |||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctca 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 3743771 - 3743853
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| |||  |||||||||| |||| |  || ||| |||||||||||||||||| | |||||| ||| |||||||||    
T  3743771 gaaaaatgttccatatacaccctttattcatccctcccattatacaccccatatattaagtatattttgataagttcatctca 3743853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 10678238 - 10678204
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccc 364  Q
    ||||||||||||||| |||||||||||||||||||    
T  10678238 aaaatgttacatgaataccctttaatcatacaccc 10678204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 17208076 - 17208156
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||    
T  17208076 aaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctca 17208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 32473492 - 32473412
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||  |||| ||| |||||||||| |||||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctca 32473412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 7617135 - 7617215
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| ||||| ||| |||||||||| |||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctca 7617215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 30622816 - 30622737
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| |||||||||||||||||||||||| | |||||  |||||||| ||||||||||||| ||||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctca 30622737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 38470581 - 38470657
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcat 406  Q
    |||||||||||| ||||||||||| |||||||  | |||||||||||||| ||||||||| ||||||||||||||||    
T  38470581 aaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcat 38470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 5256995 - 5257077
Alignment:
Q  328 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||| |||||| |||| ||||||| || |||||||||||||| ||||| ||| |||||||||| |||||||||    
T  5256995 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 5257077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 33855141 - 33855071
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaa 400  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||||| ||||| | ||||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 2614747 - 2614667
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || |||| || ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 2614667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 22512307 - 22512387
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||| | ||||||||| |||| ||||| ||| |||||||||| |||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 41334761 - 41334681
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |||||||||  ||| ||||||| || ||||| ||| |||||||||| |||||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctca 41334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 18033984 - 18034064
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||| || ||||| ||| ||||| |||| |||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctca 18034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 25915098 - 25915030
Alignment:
Q  317 atttattttaggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatatta 385  Q
    |||||||||  |||||||||||||||||||||||||| || ||||||  ||||||||||| || |||||    
T  25915098 atttattttttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatta 25915030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 33801471 - 33801551
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||||||||||||| |||||| |  ||||||| ||||||||| |||| ||||| ||| ||||| |||| |||||||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctca 33801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 11253 - 11333
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    ||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||    
T  11253 aaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctca 11333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 35554 - 35474
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||||  |||| |||||| |||||||||||||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctca 35474  T

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Target: scaffold0119 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 687 - 767
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||| ||||| ||| |||||||||| |||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 767  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 112657 - 112737
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| || ||||  | ||||||||||| || ||||| ||| |||||||||| |||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 112737  T

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Target: scaffold0187 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 14286 - 14206
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||||| |||||||| || || ||||| ||| ||||| |||| |||||||||    
T  14286 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 14206  T

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Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 24614 - 24534
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatctca 410  Q
    |||||||||||||||||||||||| |  ||||||| |||||||| || || ||||| ||| ||||| |||| |||||||||    
T  24614 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 24534  T

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Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 23519 - 23441
Alignment:
Q  330 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatatattaaggacattttggtaaattcatct 408  Q
    ||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||  || |||||||||| |||||||    
T  23519 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

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