View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11816_low_7 (Length: 411)
Name: NF11816_low_7
Description: NF11816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11816_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 59 - 403
Target Start/End: Original strand, 47212165 - 47212504
Alignment:
| Q |
59 |
ctcgcagccacaattgcgattgaagaccctttgtataaccttttattgatagttgaatcatataagcttattataaagttatagtcattactccttttga |
158 |
Q |
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| T |
47212165 |
ctcgcagccacaattgcgattgcagaccctttgtataaccttttattgatagttgaattatataagcttattataaagttatagtcattactccttttga |
47212264 |
T |
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| Q |
159 |
ttgatgttatttaaatatggtgatnnnnnnnnnnnnnnncagatttttcagcaattcactggcatcaatgcgataatgttctatgctccagttctgttca |
258 |
Q |
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| T |
47212265 |
ttgatgttatttaaatatggtgataaaaaaaaaa-----cagatttttcagcaattcactggcatcaatgcgataatgttctatgctccagttctgttca |
47212359 |
T |
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| Q |
259 |
acaccttaggattcaagaatgatgctgcactttactctgctgtgattactggtgcaatcaatgttatctcaactatagtttcaatatattcagtggataa |
358 |
Q |
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| T |
47212360 |
acaccttaggatttaagaatgatgctgcactttactctgctgtgattactggtgcaatcaatgtcatctcaactatagtttcaatatattcagtggataa |
47212459 |
T |
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| Q |
359 |
acttggtcgtcgaaagctattactcgaagccggtgttcaaatgtt |
403 |
Q |
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| T |
47212460 |
acttggtcgtcgaaagctattactggaagctggtgttcaaatgtt |
47212504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 47185683 - 47185768
Alignment:
| Q |
210 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
295 |
Q |
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| T |
47185683 |
caattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactc |
47185768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 47198219 - 47198307
Alignment:
| Q |
207 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
295 |
Q |
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| T |
47198219 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
47198307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 404
Target Start/End: Complemental strand, 748980 - 748786
Alignment:
| Q |
210 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactctgctgtgattactg |
309 |
Q |
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| T |
748980 |
caattcacaggcatcaacgcgatcatgttttatgcaccagttttgttcaatacagtgggattcaagaatgatgcttccctctattcagctgtgattactg |
748881 |
T |
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| Q |
310 |
gtgcaatcaatgttatctcaactatagtttcaatatattcagtggataaacttggtcgtcgaaagctattactcgaagccggtgttcaaatgttc |
404 |
Q |
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| T |
748880 |
gtgcagttaatgtcctctccacaattgtgtctatctacttcgttgataaacttggtcgtcgtatgttactgttggaagccggtgtacaaatgttc |
748786 |
T |
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