View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11817_high_18 (Length: 317)

Name: NF11817_high_18
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11817_high_18
NF11817_high_18
[»] chr7 (1 HSPs)
chr7 (19-307)||(41705549-41705837)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 41705549 - 41705837
Alignment:
Q  19 ataaaaatataaagatctatgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatactctcttttgtaagatgcaaagagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41705549 ataaaaatataaagatctatgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatacgctcttttgtaagatgcaaagagaa 41705648  T
Q  119 acgactttggaacttgctaaactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705649 acgactttggaacttgctaaactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattact 41705748  T
Q  219 tattaaaatatacaaaatgcttgaaaactaaaccattgtaattgttgcactatcggtaattgaagagccaatcccaacgttcgcctatg 307  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41705749 tattaaaatatacaaaatgcttgaaaactagaccattgtaattgttgcactatcggtaattgaatagccaatcccaacgttcgcctatg 41705837  T

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