View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_high_2 (Length: 815)
Name: NF11817_high_2
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 17797734 - 17797373
Alignment:
| Q |
1 |
tgacaaaaacacaaaccaccaaagtcttaaccactagttattattattactcactctatacaacaatatcatgaaccagatttaatctactttctcaaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17797734 |
tgacaaaaacacaaaccagcaaagtcttaaccactagttattatta---ctcactctatacaa---tatcatgaaccagatttaatctactttctcaaaa |
17797641 |
T |
|
| Q |
101 |
gaggtcatttcaatttgctatgctatgagaaagaagagagagatttagtcataaatgttcacaaattgttgtagaaataaagatggtacactacatctgt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797640 |
gaggtcatttcaatttgctatactatgagaaagaagagagagatttagtcataaatgttcacaaattgttgtagaaataaagatggtacactacatctgt |
17797541 |
T |
|
| Q |
201 |
acttaagggatgcaacaagccttaaaatgtgaaaacatttacttgatcttgatgctttacagaactatggtggaaattcatgatgaacagaaattgatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797540 |
acttaagggatgcaacaagccttaaaatgtgaaaacatttacttgatcttgatgctttacagaactatggtggaaattcatgatgaacagaaattgatga |
17797441 |
T |
|
| Q |
301 |
attgcaccaaatcaaggacataggagagagaaaccaaatcatgcttcccatcacatagatttgtacag |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
17797440 |
attgcaccaaatcaaggacataggagagagaaaccaaatcatgcttgccatcacatggatttgtacag |
17797373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 500 - 654
Target Start/End: Complemental strand, 17797245 - 17797091
Alignment:
| Q |
500 |
ccctaatatctgattctgatattaaccctaatcttggacttttagctagaccataaatttgactctagctatgagtttaaatttgtgaatttattttgtt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797245 |
ccctaatatctgattctgatattaaccctaatcatggacttttagctagaccataaatttgaatctagctatgagtttaaatttgtgaatttattttgtt |
17797146 |
T |
|
| Q |
600 |
cttaagcatcttaaaattgtttcattttagatcatagaattactttgcttgatct |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17797145 |
cttaagcatcttaaaattgtttcattttagatcagagaattactttgcttgatct |
17797091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 665 - 798
Target Start/End: Complemental strand, 17797060 - 17796923
Alignment:
| Q |
665 |
ttgaaaatcaacaattgcgctaatctcttacaa----cttaccataaaatctagagtttgtgaagagcaaaatatagtttcaatttctcataaaatataa |
760 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797060 |
ttgaaaatcaacaattgtgcttatctcttacaagcttcttaccataaaatctagagtttatgaagagcaaaatatagtttcaatttctcataaaatataa |
17796961 |
T |
|
| Q |
761 |
gttaggagaagaattctttgtatagtgttaagaaaatt |
798 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17796960 |
gttaggagaagaattctttttatagtgttaagaaaatt |
17796923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University