View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_high_23 (Length: 223)
Name: NF11817_high_23
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 30478001 - 30478189
Alignment:
| Q |
20 |
aaacctatctaaatgagtggtaagtacaagttagcacaaggagcaaaatagatataaaagaatgattttctaaaaccaatataaatctaagacatgtgga |
119 |
Q |
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| T |
30478001 |
aaacctatctaaatgagtggtaagtacaagttagcacaaggagaaaaatagatataaaagaatgattttctgaaaccaatataaatctaacacatgtgga |
30478100 |
T |
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| Q |
120 |
ttgatggtaagtttgataaaaccactgtattttaccgttattttaggaaaacagcactttagagcttcaacaaaatcatggtgtctctg |
208 |
Q |
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| T |
30478101 |
ttgatggtaagtttgacaaaaccactgtattttaccgttattttaggcaaacagcactttagagcttcaacaaaatcatggggtctctg |
30478189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 6019774 - 6019746
Alignment:
| Q |
174 |
cactttagagcttcaacaaaatcatggtg |
202 |
Q |
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| T |
6019774 |
cactttagagcttcaacaaaatcatggtg |
6019746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 6020689 - 6020661
Alignment:
| Q |
174 |
cactttagagcttcaacaaaatcatggtg |
202 |
Q |
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| T |
6020689 |
cactttagagcttcaacaaaatcatggtg |
6020661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 44431656 - 44431628
Alignment:
| Q |
176 |
ctttagagcttcaacaaaatcatggtgtc |
204 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44431656 |
ctttagagcttcaacaaaatcatggtgtc |
44431628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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