View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_high_9 (Length: 448)
Name: NF11817_high_9
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 50855409 - 50854991
Alignment:
| Q |
18 |
catcgatgacatgtacaaagaattttttgaactctaattgtatttcataagttatatttgcccatttcaaaatgagaaccttctcctcaatattgagttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50855409 |
catcgatgacatgtacaaagaattttttgaactctaattgtatttcataagttatatttgcccatttcaaaatgagaaccttctcctcaatattgagttt |
50855310 |
T |
|
| Q |
118 |
taccaatgtctaaggaatgaaagtttgttgcgatgtctacactagatgcaaattttaagacgtgaatatgagattaatggtacacatgccagtaagaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50855309 |
taccaatgtctaaggaatgaaagtttgttgcgatgtctacactagatgcaaattttaagacgtgaatatgagattaatggtacacatgccagtaagaaca |
50855210 |
T |
|
| Q |
218 |
acaagcacattgccaagcataatatcttatgagattgagaacttgaacattgacacagatcatgtccaagcaaatacttataataaatcatgtgacatct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50855209 |
acaagcacattgccaagcataatatcttatgagattgagaacttgaacattgacacagatcatgtccaagcaaatacttataataaatcatgtgacatct |
50855110 |
T |
|
| Q |
318 |
tgtgagattgataccttaatgttccnnnnnnnnntaaatgatgagtcaacatttgtgaacatcttcatttaagattgg-nnnnnnntattaatcgcatgg |
416 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50855109 |
tgtgagattgataccttaatgttccaaaaaaaaaaaaatgatgagtcaacatttgtgaacatcttcatttaagattggaaaaaaaatattaatcgcatgg |
50855010 |
T |
|
| Q |
417 |
aatgcttcttgcatgttct |
435 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50855009 |
aatgcttcttgcatgttct |
50854991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 50820451 - 50820871
Alignment:
| Q |
18 |
catcgatgacatgtacaaagaattttttgaactctaattgtatttcataagttatatttgcccatttcaaaatgagaaccttctcctcaatattgagttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50820451 |
catcgatgacatgtacaaagaattttttgaactctaattgtatttcataagttatatttgcccatttcaaaatgagaaccttctcctcaatattgagttt |
50820550 |
T |
|
| Q |
118 |
taccaatgtctaaggaatgaaagtttgttgcgatgtctacactagatgcaaattttaagacgtgaatatgagattaatggtacacatgccagtaagaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50820551 |
taccaatgtctaaggaatgaaagtttgttgcgatgtctacactagatgcaaattttaagacgtgaatatgagattaatggtacacatgccagtaagaaca |
50820650 |
T |
|
| Q |
218 |
acaagcacattgccaagcataatatcttatgagattgagaacttgaacattgacacagatcatgtccaagcaaatacttataataaatcatgtgacatct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50820651 |
acaagcacattgccaagcataatatcttatgagattgagaacttgaacattgacacagatcatgtccaagcaaatacttataataaatcatgtgacatct |
50820750 |
T |
|
| Q |
318 |
tgtgagattgataccttaatgttccnnnnnnnnntaaat-gatgagtcaacatttgtgaacatcttcatttaagatt--ggnnnnnnntattaatcgcat |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
50820751 |
tgtgagattgataccttaatgttccaaaaaaaaaaaaatagatgagtcaacatttgtgaacatcttcatttaagattaggaaaaaaaatattaatcgcat |
50820850 |
T |
|
| Q |
415 |
ggaatgcttcttgcatgttct |
435 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50820851 |
ggaatgcttcttgcatgttct |
50820871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University