View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_low_1 (Length: 864)
Name: NF11817_low_1
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 773; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 12 - 848
Target Start/End: Original strand, 40310695 - 40311531
Alignment:
| Q |
12 |
agagaattatacttgacattagaaagcacagatcatccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40310695 |
agagaattatacttgacattagaaagcacagatcgtccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggaattaggcattcctt |
40310794 |
T |
|
| Q |
112 |
gtaatagtaatcgatgcaaggttcttttgacgacgcattgcaaacaagaattcgcactaatgaactgccaagaagagattccattgtgtcccttatctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310795 |
gtaatagtaatcgatgcaaggttcttttgacgacgcattgcaaacaagaattcgcactaatgaactgccaagaagagattccattgtgtcccttatctat |
40310894 |
T |
|
| Q |
212 |
agaggaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaattgaatgtcaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310895 |
agaggaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaactgatctattaaatgtggcatacgaagttgcaattgaatgtcaa |
40310994 |
T |
|
| Q |
312 |
gggttgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagacattcaatgtctg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
40310995 |
gggttgcctggaacaattaaagatgtgggatcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggtctaagacattctatgtctc |
40311094 |
T |
|
| Q |
412 |
agtatgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcat |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40311095 |
agtacgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcat |
40311194 |
T |
|
| Q |
512 |
ggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaaattt |
611 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40311195 |
ggatgatgaggggttgaagggtggagacgaaatttcatcttctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaaaatt |
40311294 |
T |
|
| Q |
612 |
gcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgt |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40311295 |
gcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgt |
40311394 |
T |
|
| Q |
712 |
ccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagacatggaggtcagc |
811 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40311395 |
ccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagatatggaggtcagc |
40311494 |
T |
|
| Q |
812 |
tttacttgaagttgctagcttgagtggaataacttac |
848 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40311495 |
tttacttgaagttgctagcttgagtggaataacttac |
40311531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 50 - 839
Target Start/End: Original strand, 40326013 - 40326802
Alignment:
| Q |
50 |
aattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttgacgacgcat |
149 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
40326013 |
aattcttgtgatcttggatgatgtttcggaaaatcttgatccagaaaaggtaggcattccttgtaatagtaatcgatgcaaggtccttttgaccacatgt |
40326112 |
T |
|
| Q |
150 |
tgcaaacaagaattcgcactaatgaactgccaagaagagattccattgtgtcccttatctatagaggaagcttggactttgtttaagaagcattcaggga |
249 |
Q |
| |
|
|| ||||||| | | | || | || ||| ||||||| | | |||| ||||| | ||||||||||||||||||||| || || |||||||||| |
|
|
| T |
40326113 |
cgccaacaagattgtgagtttatacattgtcaaagggagattcaacttagtcctttatccacagaggaagcttggactttgttcaaaaaacattcaggga |
40326212 |
T |
|
| Q |
250 |
tagacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaattgaatgtcaagggttgcctggaacaattaaagatgtggggtcatcctt |
349 |
Q |
| |
|
|||| ||||||| ||| |||| || ||||||||||||| | ||||| ||||||||| ||||||| ||| ||||||||| ||| | ||| || ||||| |
|
|
| T |
40326213 |
tagataatgagtcttcatccgacctgaaaaatgtggcatacaatgttgctattgaatgtgaagggttacctagaacaattatagacgcgggatcttcctt |
40326312 |
T |
|
| Q |
350 |
aagaagtaaacctattgaggagtggaaaacatcattagacggcctaagacattcaatgtctgagtatgatattttcatcagttttagaggaaaagatact |
449 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||| |||||| || | | |||||| |||| | ||||||||||| | ||||||| |||| |||||||| |
|
|
| T |
40326313 |
aagaagcaaacctatcgaggagtggaaagcatcgttagaccatctgaaatattcaaggtctcaatatgatatttttctaagttttaaaggagaagatact |
40326412 |
T |
|
| Q |
450 |
cgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcat |
549 |
Q |
| |
|
|| ||||||| || |||||||||||| || ||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326413 |
cgctactctttcacaggttttctctataatattctgtgtcgagaggggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcat |
40326512 |
T |
|
| Q |
550 |
catctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaaatttgcacattcttcttggtgtctagatgaattggtcactat |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
40326513 |
catctctaatcaaagcaattgaggcatcaaggatttcaattgttgttttctctgaaaactttgcagattctccctggtgtctagatgaattggtcactat |
40326612 |
T |
|
| Q |
650 |
tcttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagagga |
749 |
Q |
| |
|
|| ||||| || ||| ||||||||||||||||||||| || ||||| ||||||||||| || ||||| ||||||| ||| ||||||| || || |
|
|
| T |
40326613 |
gctaaagtgcaaggagaggaagaaccaacagattttgccaatcttttacaaaatagaaccatcttgggtaagacatcagagaaatagttatggaaaagcc |
40326712 |
T |
|
| Q |
750 |
atggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagacatggaggtcagctttacttgaagttgctagcttgagtgga |
839 |
Q |
| |
|
||| |||| || | | || |||||| ||||||| ||| ||| | | | |||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
40326713 |
atgactaagcatgaagaagagtttggaaatgactctgaaaaggtgaataaatggaggtcagctttatgtgaagttgctaacttgagtgga |
40326802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 420 - 834
Target Start/End: Original strand, 40283455 - 40283869
Alignment:
| Q |
420 |
attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatg |
519 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | |||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
40283455 |
attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatg |
40283554 |
T |
|
| Q |
520 |
aggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaaatttgcacattc |
619 |
Q |
| |
|
||||| |||| || ||| | |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| |||| |||||| |||| |
|
|
| T |
40283555 |
aggaactgaaaggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaaggatttcaattgttgttttttctgaaaactttgcagattc |
40283654 |
T |
|
| Q |
620 |
ttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgtccgatgta |
719 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
40283655 |
tccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttttacaaaatagaaccgtccgatgta |
40283754 |
T |
|
| Q |
720 |
aggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagacatggaggtcagctttacttg |
819 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||| || |||| |||||| ||||||| ||||||| || || |||||||||||||||| || |
|
|
| T |
40283755 |
aggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaaaggaatggaggtcagctttatctg |
40283854 |
T |
|
| Q |
820 |
aagttgctagcttga |
834 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
40283855 |
aagttgctaacttga |
40283869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 51 - 814
Target Start/End: Complemental strand, 40257456 - 40256693
Alignment:
| Q |
51 |
attcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttgacgacgcatt |
150 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| ||||| || ||||| |||| |||||||||||| ||||| |||||||||| ||| |||| || | | |
|
|
| T |
40257456 |
attctcgtgatcttgaatgatgtttgttcaaagcttgagctagaggatataggtattccttgtaatggtaatagatgcaaggtgcttctgaccacacgtc |
40257357 |
T |
|
| Q |
151 |
gcaaacaagaattcgcactaatgaactgccaagaagagattccattgtgtcccttatctatagaggaagcttggactttgtttaagaagcattcagggat |
250 |
Q |
| |
|
|| || ||||| || | ||| | || ||| |||||||||| | |||| ||||| | ||| ||||||||||||||| | || || |||||||| || |
|
|
| T |
40257356 |
gccaaagagaatgtgccttgatggattgtcaaagagagattccactaggtccgttatccaaagatgaagcttggactttgctcaaaaaacattcaggcat |
40257257 |
T |
|
| Q |
251 |
agacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaattgaatgtcaagggttgcctggaacaattaaagatgtggggtcatcctta |
350 |
Q |
| |
|
||| |||||||||||| |||| ||||||| || ||| | ||||||| ||||||| ||||||| ||||| ||||||||||| ||||| || |||||| |
|
|
| T |
40257256 |
agatgatgagtcctcatccgaaatattaaacgtagcacatcaagttgcttatgaatgtgaagggttacctggtacaattaaagaagtgggatcttcctta |
40257157 |
T |
|
| Q |
351 |
agaagtaaacctattgaggagtggaaaacatcattagacggcctaagacattcaatgtctgagtatgatattttcatcagttttagaggaaaagatactc |
450 |
Q |
| |
|
| |||||||||| |||||||||||||| |||||||||| || | |||||||||||| || || ||||||| |||| ||| ||||| ||||||||| |
|
|
| T |
40257156 |
aaaagtaaacctgttgaggagtggaaagaatcattagacagcttgagacattcaatggctcgctaccatatttttctcagctttcgaggagaagatactc |
40257057 |
T |
|
| Q |
451 |
gtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatc |
550 |
Q |
| |
|
|| | |||||||| || | ||||||| |||| | |||| || || || || |||||||||||||| | | |||| ||||||| | |||||||| |
|
|
| T |
40257056 |
gttattcttttacaggctctctctatcgtgctttgtgccaggtcggatttaaaaccttcatggatgaaggaggattggagggtggtgaccaaatttcact |
40256957 |
T |
|
| Q |
551 |
atctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaaatttgcacattcttcttggtgtctagatgaattggtcactatt |
650 |
Q |
| |
|
|| || |||| |||||||| ||||||||| |||| |||||||||| || |||| |||||| |||| || |||||||| |||||| | || | ||| |
|
|
| T |
40256956 |
ttcacttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagatt |
40256857 |
T |
|
| Q |
651 |
cttaagtgtaaaaagatgaagaaccaacagattttgccgattttttataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaa |
750 |
Q |
| |
|
||| |||||| || |||||||| ||| ||| ||| |||||||| ||| | || || || ||||||||| ||||||| || ||||||| | || || |
|
|
| T |
40256856 |
cttgagtgtatgaaaatgaagaatcaattagtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaagaatagttatggtaaagcaa |
40256757 |
T |
|
| Q |
751 |
tggctaaacaagtaaaaaggtttggtaatgactttgagaagttacagacatggaggtcagcttt |
814 |
Q |
| |
|
|| || |||| | ||| | ||||| ||||| | ||||||| |||| | |||||| |||||||| |
|
|
| T |
40256756 |
tgactgaacatgaaaataattttggaaatgattatgagaagatacaaaaatggagatcagcttt |
40256693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 420 - 515
Target Start/End: Original strand, 40303497 - 40303592
Alignment:
| Q |
420 |
attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggat |
515 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || || ||||| ||||| || ||||||||| |
|
|
| T |
40303497 |
attttcatcagttttagaggagaagatactcggtactcttttacgggttttctctatgatgctctctgtcgagaaggattcaaaacattcatggat |
40303592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 519
Target Start/End: Complemental strand, 40597865 - 40597647
Alignment:
| Q |
301 |
ttgaatgtcaagggttgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagaca |
400 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||| || ||||||||| ||||||| |||||||| |||||| ||||| |||| | || ||||| |
|
|
| T |
40597865 |
ttgaatgcgaagggttaccgagaacaattaaagatgtgggatcttccttaagaggtaaaccaattgaggaatggaaagcatcactagatagtctgagaca |
40597766 |
T |
|
| Q |
401 |
ttcaatgtctgagtatgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttc |
500 |
Q |
| |
|
||||||| | | | | |||||| | |||||||||||| ||||||| || |||||||||| ||| ||| ||| | ||| |||| | | || ||| |
|
|
| T |
40597765 |
ttcaatggccaaatggcaaattttcttaagttttagaggagaagatacacgctactcttttacaggtaatctgtataaagctttatgtcaagggggattc |
40597666 |
T |
|
| Q |
501 |
aagaccttcatggatgatg |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40597665 |
aagaccttcatggatgatg |
40597647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 442 - 607
Target Start/End: Original strand, 40362336 - 40362501
Alignment:
| Q |
442 |
aagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatgaggaattgaagggtgggaatga |
541 |
Q |
| |
|
|||||||||| |||| |||||||| || |||||| ||||| | || || || || ||||||| ||||||||||||||||| |||| ||||||| || | |
|
|
| T |
40362336 |
aagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacca |
40362435 |
T |
|
| Q |
542 |
aatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaa |
607 |
Q |
| |
|
||||||| | ||||| ||||||||||||| ||||||| ||||| || ||||||| ||| |||| |
|
|
| T |
40362436 |
aatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa |
40362501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 40333567 - 40333667
Alignment:
| Q |
42 |
gatcatccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttga |
141 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||| ||| ||| |||| || ||| |||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40333567 |
gatcgtccaatacttgtgatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttgtaatagtaatctatgcaaggttcttttga |
40333666 |
T |
|
| Q |
142 |
c |
142 |
Q |
| |
|
| |
|
|
| T |
40333667 |
c |
40333667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 40598128 - 40598033
Alignment:
| Q |
47 |
tccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttgac |
142 |
Q |
| |
|
||||||||| ||||| || ||||||||| ||| ||| |||||| || || |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
40598128 |
tccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgac |
40598033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 638
Target Start/End: Original strand, 40409142 - 40409274
Alignment:
| Q |
506 |
cttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaa |
605 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||| | || || ||||||||||||| ||||||| ||||| || ||||||| ||| || |
|
|
| T |
40409142 |
cttcatggatgatgagggattgaagggtggaaaccaaatttcacaaactttactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaa |
40409241 |
T |
|
| Q |
606 |
aaatttgcacattcttcttggtgtctagatgaa |
638 |
Q |
| |
|
|| |||| | |||| | |||||||| |||||| |
|
|
| T |
40409242 |
aactttggatattccacatggtgtcttgatgaa |
40409274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 40376600 - 40376700
Alignment:
| Q |
42 |
gatcatccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttga |
141 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| ||| || |||| || ||| |||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
40376600 |
gatcatcctatacttgtgatctttgatgatgttcgggcaagatttgacctacgggatgtaggaattccttgtactagtaatctatgcaaggttcttttga |
40376699 |
T |
|
| Q |
142 |
c |
142 |
Q |
| |
|
| |
|
|
| T |
40376700 |
c |
40376700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 40386845 - 40386945
Alignment:
| Q |
42 |
gatcatccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggagttaggcattccttgtaatagtaatcgatgcaaggttcttttga |
141 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||| ||| ||| |||| || ||| |||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
40386845 |
gatcgtccaatacttgttatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttctaatagtaatcgatgcaaggtacttttga |
40386944 |
T |
|
| Q |
142 |
c |
142 |
Q |
| |
|
| |
|
|
| T |
40386945 |
c |
40386945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 638
Target Start/End: Original strand, 40406425 - 40406565
Alignment:
| Q |
498 |
ttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttt |
597 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||||| || |||||||| | |||| || |||||||||| ||||||| ||||| || |||||| |
|
|
| T |
40406425 |
ttcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactcttctcgaagcaattgaaaaatcaaggctttcaattgttgttt |
40406524 |
T |
|
| Q |
598 |
tctctaaaaaatttgcacattcttcttggtgtctagatgaa |
638 |
Q |
| |
|
| ||| |||| |||| | |||| | |||||||| |||||| |
|
|
| T |
40406525 |
tgtctgaaaactttggatattccacgtggtgtcttgatgaa |
40406565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 40597976 - 40597943
Alignment:
| Q |
199 |
gtcccttatctatagaggaagcttggactttgtt |
232 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
40597976 |
gtcccttatctatagaggaatcttggactttgtt |
40597943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 26118818 - 26118783
Alignment:
| Q |
50 |
aattcttgtgatcttggatgatgtttgggaaaatct |
85 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26118818 |
aattcttgtgatcttggatgatgtgtgggaaaatct |
26118783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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