View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11817_low_10 (Length: 447)

Name: NF11817_low_10
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11817_low_10
NF11817_low_10
[»] chr4 (13 HSPs)
chr4 (18-429)||(6387791-6388202)
chr4 (18-123)||(10482038-10482143)
chr4 (190-309)||(6392501-6392620)
chr4 (33-123)||(10467900-10467989)
chr4 (58-138)||(10571424-10571504)
chr4 (192-309)||(10553828-10553954)
chr4 (242-327)||(10481828-10481913)
chr4 (174-226)||(831996-832048)
chr4 (190-221)||(8437405-8437436)
chr4 (262-309)||(8443800-8443847)
chr4 (53-131)||(829715-829793)
chr4 (232-309)||(10571607-10571684)
chr4 (18-138)||(10460467-10460587)
[»] chr1 (1 HSPs)
chr1 (35-121)||(50645610-50645696)
[»] chr8 (1 HSPs)
chr8 (190-239)||(21258682-21258731)
[»] chr3 (1 HSPs)
chr3 (242-309)||(25915638-25915705)
[»] chr2 (1 HSPs)
chr2 (258-286)||(25376801-25376829)


Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 6388202 - 6387791
Alignment:
Q  18 catcaaaacaacaatctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaaga 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6388202 catcaaaacaacaagctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcacttgatagatcaagtgaaaga 6388103  T
Q  118 atcacacattgcttaacagtagtaagtctatcattccaataaaatatatccgaaacagagtgatcacgtagagccaaccagttaatagtaccattcaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6388102 atcacacattgcttaacagtagtaagtctatcattccaataaaatatatccgaaacagagtgatcacgtagagccaaccagttaatagtatcattcaaat 6388003  T
Q  218 acaccccatggttattaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6388002 acaccccatggttattaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattct 6387903  T
Q  318 tggattaccatgctccacgtccaactctttgcagaatgacaccaccttataagttttggccaaagtatcgtaaccaaaagcaaaccaaatacaattgtta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387902 tggattaccatgctccacgtccaactctttgcagaatgacaccaccttataagttttggccaaagtatcgtaaccaaaagcaaaccaaatacaattgtta 6387803  T
Q  418 gaagagggtaac 429  Q
    ||||||||||||    
T  6387802 gaagagggtaac 6387791  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 10482143 - 10482038
Alignment:
Q  18 catcaaaacaacaatctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaaga 117  Q
    |||||||||  ||| |||||| |||| |||||  ||||||| |||| ||||||| ||||| |||||||||||| ||||| | || |||||||||||||||    
T  10482143 catcaaaaccgcaagctttggttgatgacgtgacaccttattaaaaccccgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaaga 10482044  T
Q  118 atcaca 123  Q
    ||||||    
T  10482043 atcaca 10482038  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 6392620 - 6392501
Alignment:
Q  190 gccaaccagttaatagtaccattcaaatacaccccatggttat-taaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattc 288  Q
    |||||||| |||||||||||| ||| |||||| |||| ||||| ||||| |||||  |||| | |  |||||||||||||||||||||||||||||||      
T  6392620 gccaaccaattaatagtaccagtcacatacacaccattgttatctaaacttgcaat-tggaggaacagggaagcattgaatatttctccaagaattatca 6392522  T
Q  289 cccatgctgaaaattttcacc 309  Q
    ||||| |||||||| ||||||    
T  6392521 cccatactgaaaatattcacc 6392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 10467989 - 10467900
Alignment:
Q  33 ctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaagaatcaca 123  Q
    ||||||||||| |||||  ||||||| |||| | ||||| ||||| |||||||||||| ||||| | || |||||||||||||||||||||    
T  10467989 ctttggctgatgacgtgacaccttat-aaaacctcgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcaca 10467900  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 10571424 - 10571504
Alignment:
Q  58 tcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaagaatcacacattgcttaacagta 138  Q
    |||||| ||||||||||||| |||| |||||||  |||| | || ||||||||||||| ||||||| |||||| |||||||    
T  10571424 tcaaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaacagta 10571504  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 10553828 - 10553954
Alignment:
Q  192 caaccagttaatagtaccattcaaatacaccccatggttatt---------aaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaa 282  Q
    |||||||||||| ||||||||||||||||| |||| ||| ||         ||||| | |||||||||||| |||||| |||||||| |||||||| |||    
T  10553828 caaccagttaattgtaccattcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccatgaa 10553927  T
Q  283 ttattccccatgctgaaaattttcacc 309  Q
    |||| | ||||| |||| | |||||||    
T  10553928 ttatccgccatgttgaatactttcacc 10553954  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 10481913 - 10481828
Alignment:
Q  242 aaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacccagattcttggattacca 327  Q
    ||||||||||||  || || |||||||||||||||||| |||||| || ||| ||||||| |||||||  | |||||| |||||||    
T  10481913 aaagtggaagcacaggaaaacattgaatatttctccaacaattatccctcatactgaaaactttcaccacgcttcttgcattacca 10481828  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 832048 - 831996
Alignment:
Q  174 agagtgatcacgtagagccaaccagttaatagtaccattcaaatacaccccat 226  Q
    ||||| |||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  832048 agagtaatcacgaagagccaaccagttaataataccattcaaatgcacaccat 831996  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 8437405 - 8437436
Alignment:
Q  190 gccaaccagttaatagtaccattcaaatacac 221  Q
    ||||||||||||||||||||||||||||||||    
T  8437405 gccaaccagttaatagtaccattcaaatacac 8437436  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 8443800 - 8443847
Alignment:
Q  262 cattgaatatttctccaagaattattccccatgctgaaaattttcacc 309  Q
    ||||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  8443800 cattgaatatttctccaagaactattcccaatgcttaaaactttcacc 8443847  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 829715 - 829793
Alignment:
Q  53 ccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaagaatcacacattgctt 131  Q
    ||||| ||||| || |||| ||| | |||| ||||||| ||||| |||| |||||||||||||||||| || |||||||    
T  829715 ccttaacaaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgcatattgctt 829793  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 10571607 - 10571684
Alignment:
Q  232 ttaaacctgcaaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacc 309  Q
    ||||||| | |||||||||||| |||||| |||||||| |||||||  ||||||| | ||||| |||| | |||||||    
T  10571607 ttaaaccagtaaagtggaagcacggggaaacattgaatgtttctccttgaattatccgccatgttgaatactttcacc 10571684  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 10460587 - 10460467
Alignment:
Q  18 catcaaaacaacaatctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaaga 117  Q
    ||||||||| ||||   |||||||||||||||| |||| ||| ||| ||||||| | ||| |  ||||||||| |||||  ||| ||||| | ||||| |    
T  10460587 catcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaaca 10460488  T
Q  118 atcacacattgcttaacagta 138  Q
    |||||| ||| || |||||||    
T  10460487 atcacatatttctcaacagta 10460467  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 50645610 - 50645696
Alignment:
Q  35 ttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcactggatagatcaagtgaaagaatca 121  Q
    |||||||||||||||||| ||| | |||| ||||||| ||||| | |||||||||| ||||  |||| |||||||||||||||||||    
T  50645610 ttggctgataacgtggaagcttgtgaaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaagtgaaagaatca 50645696  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 21258731 - 21258682
Alignment:
Q  190 gccaaccagttaatagtaccattcaaatacaccccatggttattaaacct 239  Q
    |||||||| |||||||||||| |||||||||| |||| ||||||||||||    
T  21258731 gccaaccaattaatagtaccactcaaatacacaccattgttattaaacct 21258682  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 25915638 - 25915705
Alignment:
Q  242 aaagtggaagcatggggaagcattgaatatttctccaagaattattccccatgctgaaaattttcacc 309  Q
    |||| |||||||  |||||||||||||| |||||||| |||| || ||||||||||| || |||||||    
T  25915638 aaaggggaagcacagggaagcattgaatgtttctccatgaatcatcccccatgctgagaactttcacc 25915705  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 25376829 - 25376801
Alignment:
Q  258 gaagcattgaatatttctccaagaattat 286  Q
    |||||||||||||||||||||||||||||    
T  25376829 gaagcattgaatatttctccaagaattat 25376801  T

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