View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11817_low_11 (Length: 435)

Name: NF11817_low_11
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11817_low_11
NF11817_low_11
[»] chr4 (28 HSPs)
chr4 (16-435)||(6388181-6388600)
chr4 (262-408)||(6372413-6372559)
chr4 (213-427)||(6392770-6392987)
chr4 (76-199)||(10475405-10475528)
chr4 (291-408)||(10468010-10468127)
chr4 (291-408)||(10482149-10482266)
chr4 (324-408)||(11971000-11971084)
chr4 (310-382)||(837770-837842)
chr4 (306-422)||(8443454-8443570)
chr4 (346-408)||(11981723-11981785)
chr4 (324-408)||(10464237-10464321)
chr4 (306-406)||(53774810-53774910)
chr4 (291-367)||(829582-829658)
chr4 (76-199)||(10464470-10464593)
chr4 (352-408)||(832185-832241)
chr4 (346-408)||(10475175-10475237)
chr4 (306-408)||(10571276-10571378)
chr4 (79-208)||(10484619-10484747)
chr4 (103-196)||(10553337-10553430)
chr4 (103-196)||(10571067-10571160)
chr4 (213-253)||(8443349-8443389)
chr4 (213-269)||(10460753-10460809)
chr4 (76-119)||(10482453-10482496)
chr4 (76-117)||(8437061-8437102)
chr4 (76-117)||(8447415-8447456)
chr4 (306-427)||(10460574-10460695)
chr4 (291-408)||(10493645-10493762)
chr4 (306-370)||(8447654-8447718)
[»] chr1 (3 HSPs)
chr1 (298-409)||(50645477-50645588)
chr1 (304-382)||(4570921-4570999)
chr1 (76-118)||(50645264-50645306)
[»] chr2 (3 HSPs)
chr2 (306-408)||(25377042-25377144)
chr2 (306-408)||(554444-554546)
chr2 (324-378)||(20975556-20975610)
[»] chr7 (16 HSPs)
chr7 (306-410)||(22063608-22063712)
chr7 (306-410)||(22100459-22100563)
chr7 (306-408)||(22080836-22080938)
chr7 (305-408)||(22070079-22070182)
chr7 (306-408)||(660847-660949)
chr7 (328-408)||(9807792-9807872)
chr7 (305-408)||(20374502-20374605)
chr7 (306-408)||(20352063-20352165)
chr7 (305-382)||(1985954-1986031)
chr7 (326-381)||(19637237-19637292)
chr7 (330-408)||(13416935-13417013)
chr7 (306-379)||(14076675-14076748)
chr7 (306-379)||(14386703-14386776)
chr7 (307-376)||(29106814-29106883)
chr7 (307-367)||(24035760-24035820)
chr7 (308-376)||(29899374-29899442)
[»] chr3 (2 HSPs)
chr3 (306-428)||(25901279-25901401)
chr3 (306-428)||(25915297-25915419)
[»] scaffold0867 (1 HSPs)
scaffold0867 (306-410)||(4669-4773)
[»] chr8 (2 HSPs)
chr8 (357-408)||(27618459-27618510)
chr8 (346-402)||(42846465-42846521)
[»] chr6 (4 HSPs)
chr6 (306-406)||(20770620-20770720)
chr6 (300-394)||(6935212-6935306)
chr6 (305-382)||(6921349-6921426)
chr6 (329-374)||(19746717-19746762)
[»] chr5 (2 HSPs)
chr5 (324-407)||(18964848-18964931)
chr5 (329-374)||(23086784-23086829)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 6388600 - 6388181
Alignment:
Q  16 acatcaattcaaactagtttatatgaatgacataaaataaaagtagttatacgtgttagggaaactcacattcaatgtgtcgaaactaaactttcaacgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6388600 acatcaattcaaactagtttatatgaatgacataaaataaaactagttatacgtgttagggaaactcacattcaatgtgtcaaaactaaactttcaacgt 6388501  T
Q  116 aatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgtctttgcagttatagataaatgcctcttcgtcattgtgatc 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6388500 aatcattggtccgggaccacaatattttattggtaatttcaattctcttgactctgttgtctttgcagttatagataaatgcctcttcgtcatcgtgatc 6388401  T
Q  216 atttgccaatatcaatgtatccctgttctcagaaagatatagtggtaacaaatctaagtgtttatgctccattagtgaaaagaaattgctataactaatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6388400 atttgccaatatcaatgtatccctgttctcagaaagatatagtggtaacaaatctaactgtttatgctccattggtgaaaagaaattgctataactaatt 6388301  T
Q  316 tttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaagatagcaca 415  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| ||    
T  6388300 tttaatagttgaatccaagactcttgggcgccaaaatccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaaagacagccca 6388201  T
Q  416 tcaaaacaacaatctttggc 435  Q
    |||||||||||| |||||||    
T  6388200 tcaaaacaacaagctttggc 6388181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 408
Target Start/End: Complemental strand, 6372559 - 6372413
Alignment:
Q  262 aacaaatctaagtgtttatgctccattagtgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcattt 361  Q
    ||||||||||| ||||| || ||||||  ||||||||||||| |||||||||||||  ||| ||||||| ||||||||||| | ||| ||||||||||||    
T  6372559 aacaaatctaactgtttttgttccattgctgaaaagaaattgttataactaattttatataattgaatctaagactcttgaactccagaatccttcattt 6372460  T
Q  362 gccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||||||| |||||| |||| |||| | | || |||||||||||||    
T  6372459 gccatataataaaatgggtttcctcatagttattacaaaaacaaaga 6372413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 213 - 427
Target Start/End: Complemental strand, 6392987 - 6392770
Alignment:
Q  213 atcatttgccaatatcaatgtatccctgttctcagaaagatatagtggtaacaaatctaagtgtttatgctccattagtgaaaagaaattgctataacta 312  Q
    |||||||| || |||||||||||| |  ||| |||||||||| | |||  ||||||  ||   |||| ||||||||| ||||| ||||||| | ||||||    
T  6392987 atcatttgtcagtatcaatgtatcaccattcccagaaagatacaatggcgacaaattaaaccatttaagctccattattgaaaggaaattgttgtaacta 6392888  T
Q  313 atttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccat---ataacaaaatgagtttgctcaaaatcatgacaaaaacaaagat 409  Q
    ||||| |||| ||||||||||||||| ||| | |||||||||||||||||||||   || |||||||| |||| |||| | ||| ||||||||||||||     
T  6392887 attttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggtttcctcatagtcaagacaaaaacaaagaa 6392788  T
Q  410 agcacatcaaaacaacaa 427  Q
    ||  ||||||||| ||||    
T  6392787 agtccatcaaaaccacaa 6392770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 10475528 - 10475405
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgt 175  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| ||||   |  |||| ||||| ||||| ||||||||||||| ||| ||||| ||||    
T  10475528 gaaactcactttcaacgtgtcgaaactaaactttcaacgtaatccttggcatgcaaccagaatatattattagtaattccaattcgctttactctattgt 10475429  T
Q  176 ctttgcagttatagataaatgcct 199  Q
    |||||| |||||||||||||||||    
T  10475428 ctttgcggttatagataaatgcct 10475405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 10468127 - 10468010
Alignment:
Q  291 tgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaa 390  Q
    ||||||||||||  ||||| ||||||| |||| |||||||||||||   ||| | ||||||||||||||||||||||||||||||| ||||| |||| ||    
T  10468127 tgaaaagaaattcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataa 10468028  T
Q  391 tcatgacaaaaacaaaga 408  Q
    |||||||  |||||||||    
T  10468027 tcatgaccgaaacaaaga 10468010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 10482266 - 10482149
Alignment:
Q  291 tgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaa 390  Q
    ||||||||||||   |||| ||||||| |||| |||||||||||||   ||| | ||||||||||||||||||||||||||||||| ||||| |||| ||    
T  10482266 tgaaaagaaattctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataa 10482167  T
Q  391 tcatgacaaaaacaaaga 408  Q
    ||||||| ||||||||||    
T  10482166 tcatgaccaaaacaaaga 10482149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 11971000 - 11971084
Alignment:
Q  324 ttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    |||| ||||||||||||   | ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  11971000 ttgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagtttgttcaaaatcatgagaaaaacaaaga 11971084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 837842 - 837770
Alignment:
Q  310 ctaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagttt 382  Q
    |||||||| |||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggttt 837770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 8443454 - 8443570
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| |||| ||||||||||||||| ||| | |||||||||||||| ||||| |||||| ||||||||  ||  ||||||| | ||||||||    
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  406 agatagcacatcaaaac 422  Q
    ||| ||  |||||||||    
T  8443554 agacagtccatcaaaac 8443570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 11981723 - 11981785
Alignment:
Q  346 ccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  11981723 ccaaattccttcatttgccatataacaaaatgagtttgttgaaaatcatgagaaaaacaaaga 11981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 10464321 - 10464237
Alignment:
Q  324 ttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || |  |  ||||||| |||||||||||||    
T  10464321 ttgaatccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaaga 10464237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 53774910 - 53774810
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| |  | |||| |||||||||||| | | ||||| |||||||||||||||||||||||||||||||  | |||||||| | ||||||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaa 53774811  T
Q  406 a 406  Q
    |    
T  53774810 a 53774810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 829582 - 829658
Alignment:
Q  291 tgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccata 367  Q
    ||||||||||||   |||||||||||| |||| ||||| ||||||||||||| | ||||||||||||||||| ||||    
T  829582 tgaaaagaaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 829658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 10464593 - 10464470
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgt 175  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||| ||||   |  |||| ||||   || | ||||||||||||| ||  ||||| ||||    
T  10464593 gaaactcactttcaacgtgtcgaaactagactttcaacgtaatccttggcatgcaaccataatacagtactagtaattccaattcgctctactctattgt 10464494  T
Q  176 ctttgcagttatagataaatgcct 199  Q
    ||||||  ||||||||||||||||    
T  10464493 ctttgcctttatagataaatgcct 10464470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 832241 - 832185
Alignment:
Q  352 tccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||||||||||||||| | || ||| |||| |||||||||||||||||||||||||    
T  832241 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaaga 832185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 10475237 - 10475175
Alignment:
Q  346 ccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    |||||||||||||||||||||||||||||||| || |  |  ||||||| |||||||||||||    
T  10475237 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaaga 10475175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 10571276 - 10571378
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| || |  |||||||||||||||||| | ||||||||  |||||| ||||| ||||| |||| ||  ||  |||||||||||||| |||    
T  10571276 ataactaattttaaacaactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaagatgacttcccttgaaatcatgacaaaagcaa 10571375  T
Q  406 aga 408  Q
    |||    
T  10571376 aga 10571378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 10484747 - 10484619
Alignment:
Q  79 actcacattcaatgtgtcgaaactaaactttcaacgtaatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgtctt 178  Q
    |||||| ||||| |||||||||||| ||||||||||||||| ||||   |  |||| |||||  |||| |||||||||||||  |  ||||| ||||||     
T  10484747 actcactttcaacgtgtcgaaactagactttcaacgtaatccttggcatgcaaccagaatatagtattagtaattccaattcgatctactctattgtctg 10484648  T
Q  179 tgcagttatagataaatgcctcttcgtcat 208  Q
    ||| ||||| ||||||||||| ||| ||||    
T  10484647 tgccgttat-gataaatgccttttcttcat 10484619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 10553337 - 10553430
Alignment:
Q  103 aaactttcaacgtaatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgtctttgcagttatagataaatg 196  Q
    ||||||||||||||||| |||| ||   ||||| |||||||||| ||||||| ||||  || | |||| |||||| |||| |||||||||||||    
T  10553337 aaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaatttgctcgcctctattgtctctgcaattatagataaatg 10553430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 10571067 - 10571160
Alignment:
Q  103 aaactttcaacgtaatcattggtccgggaccacaatattttattggtaattccaattctcttgactctgttgtctttgcagttatagataaatg 196  Q
    ||||||||||||||||| |||| ||   ||||| |||||||||| ||||||| ||||  || | |||| |||||| |||| |||||||||||||    
T  10571067 aaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaatttgctcgcctctattgtctctgcaattatagataaatg 10571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 8443349 - 8443389
Alignment:
Q  213 atcatttgccaatatcaatgtatccctgttctcagaaagat 253  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  8443349 atcatttgccaatatcaatgtatcgccgttctcagaaagat 8443389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 10460809 - 10460753
Alignment:
Q  213 atcatttgccaatatcaatgtatccctgttctcagaaagatatagtggtaacaaatc 269  Q
    ||||||| ||||||||| |||||| |  |||||||||||||||| ||||||||||||    
T  10460809 atcatttaccaatatcagtgtatcaccattctcagaaagatataatggtaacaaatc 10460753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 10482496 - 10482453
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaatc 119  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  10482496 gaaactcactttcaatgagtcgaaaccaaactttcaacgtaatc 10482453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 8437061 - 8437102
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaa 117  Q
    ||||||||||||||| | |||||||| |||||||||||||||    
T  8437061 gaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 8447415 - 8447456
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaa 117  Q
    ||||||||||||||| | |||||||| |||||||||||||||    
T  8447415 gaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 10460695 - 10460574
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||  | |||| |||| |||| ||||| ||| | ||||||| |||||| || ||||| ||||||||||||  || |||||||| | | ||||||    
T  10460695 ataactaataataaataattgagtccatgactcgtgaactccaaaattcttcatctgtcatatcacaaaatgagttcccttaaaatcataagagaaacaa 10460596  T
Q  406 agatagcacatcaaaacaacaa 427  Q
    ||| ||  ||||||||| ||||    
T  10460595 agacagtccatcaaaaccacaa 10460574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 10493762 - 10493645
Alignment:
Q  291 tgaaaagaaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaa 390  Q
    |||||| |||||  |||||| ||||||  ||| ||||||||||||||| ||| | | |||||| ||||||| ||| || |||||||| || |  |  |||    
T  10493762 tgaaaataaattcttataaccaattttatataattgaatccaagactcatgatctcgaaaatctttcattttccagattacaaaatgggtattttggaaa 10493663  T
Q  391 tcatgacaaaaacaaaga 408  Q
    |||||||||||| |||||    
T  10493662 tcatgacaaaaagaaaga 10493645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 8447654 - 8447718
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataa 370  Q
    |||| ||||||| |||| ||||||||||||||| ||| | || ||||||||||| ||||| ||||    
T  8447654 ataattaattttaaataattgaatccaagactcatgaactccgaaatccttcatctgccaaataa 8447718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 50645477 - 50645588
Alignment:
Q  298 aaattgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgac 397  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||  |||||||||||||     
T  50645477 aaattgttataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagttccctcaaaatcatgaa 50645576  T
Q  398 aaaaacaaagat 409  Q
    ||| ||||||||    
T  50645577 aaatacaaagat 50645588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 4570999 - 4570921
Alignment:
Q  304 ctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagttt 382  Q
    |||||||||||||| |  | |||| ||||||| |||| | | ||||| | ||||||||||||||||||||||| |||||    
T  4570999 ctataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 4570921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 50645264 - 50645306
Alignment:
Q  76 gaaactcacattcaatgtgtcgaaactaaactttcaacgtaat 118  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||    
T  50645264 gaaactcactttcaatgagtcggaactaaactttcaacgtaat 50645306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 25377144 - 25377042
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| |||| ||||||||||||||||||| | ||||||||||||||   |||||||||||||||  ||| ||| ||||||||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcctccaaatcatgacaaaaacaa 25377045  T
Q  406 aga 408  Q
    |||    
T  25377044 aga 25377042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 554546 - 554444
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| | || |||| |||||||||||| | | ||| | ||  ||||||||||||||| || ||| |||  ||||||||| ||| ||||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggttccctcaaaatcgtgagaaaaacaa 554447  T
Q  406 aga 408  Q
    |||    
T  554446 aga 554444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 20975610 - 20975556
Alignment:
Q  324 ttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatga 378  Q
    |||||||||||| |||| | | ||||| ||| |||||||||||||||||||||||    
T  20975610 ttgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatga 20975556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 410
Target Start/End: Complemental strand, 22063712 - 22063608
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| ||||  ||| ||||||||||||||   ||||| |||||||||||||||||||||||||||||||| |  ||||||||| ||||||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcatgaaaaaaacaa 22063613  T
Q  406 agata 410  Q
    |||||    
T  22063612 agata 22063608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 410
Target Start/End: Complemental strand, 22100563 - 22100459
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| ||||  ||| |||||||||||||| | ||||| | ||||||||||||||||| |||||||||||  |  ||||||||| ||||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaacaa 22100464  T
Q  406 agata 410  Q
    |||||    
T  22100463 agata 22100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 22080938 - 22080836
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| ||||   || |||||||||||||| | ||||| | ||||||||||||||||| |||||||||||| |  ||||||||| ||||||||    
T  22080938 ataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaaaaacaa 22080839  T
Q  406 aga 408  Q
    |||    
T  22080838 aga 22080836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 22070182 - 22070079
Alignment:
Q  305 tataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaaca 404  Q
    ||||||||||||| ||||   || |||||||||||||| | ||||| | ||||||||||||||||| |||||||||| | |  ||||||||| |||||||    
T  22070182 tataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaaca 22070083  T
Q  405 aaga 408  Q
    ||||    
T  22070082 aaga 22070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 660847 - 660949
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| |  | |||| |||||||||||| | | | ||| |||||||| ||||||||||||||| ||||||| |  ||||| ||||||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaacgagtttgtttgaaatcgtgacaaaaacaa 660946  T
Q  406 aga 408  Q
    |||    
T  660947 aga 660949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 9807872 - 9807792
Alignment:
Q  328 atccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||||||||||| | | ||||| |||||||| ||||||||||| ||||  |||| ||  |||||||||||||||||||||    
T  9807872 atccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcatgacaaaaacaaaga 9807792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 20374502 - 20374605
Alignment:
Q  305 tataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaaca 404  Q
    ||||||||||||| || ||||||||||| || |||  | | ||||| |||||||||| |||||| |||||||||||||| |   |||||||  |||||||    
T  20374502 tataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagtttgtttgtaatcatgtgaaaaaca 20374601  T
Q  405 aaga 408  Q
    ||||    
T  20374602 aaga 20374605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 20352165 - 20352063
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| || |||||| |||| || |||| | | ||||| |||||||||| |||||| |||||||||||||| |   |||||||  ||||||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagtttgtttgtaatcatgtgaaaaacaa 20352066  T
Q  406 aga 408  Q
    |||    
T  20352065 aga 20352063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 1985954 - 1986031
Alignment:
Q  305 tataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagttt 382  Q
    ||||||||||||| || | |||| ||||||| |||| | ||||||| |||||||||||||| | ||||||||| ||||    
T  1985954 tataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttt 1986031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 19637237 - 19637292
Alignment:
Q  326 gaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtt 381  Q
    ||||||| ||||||||| | ||||| ||||||||||||||||||| ||||| ||||    
T  19637237 gaatccacgactcttgaactccaaattccttcatttgccatataataaaatcagtt 19637292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 13416935 - 13417013
Alignment:
Q  330 ccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||||||||| | | ||||| ||||||||||||||||| | |||||  |||| || |||||||| | |||||||||||    
T  13416935 ccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaaaga 13417013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 14076748 - 14076675
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgag 379  Q
    |||||||||||| |  | |||| ||||||| |||| | | ||||| |||||||||||||||||||| |||||||    
T  14076748 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14076675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 14386776 - 14386703
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgag 379  Q
    |||||||||||| |  | |||| ||||||| |||| | | ||||| |||||||||||||||||||| |||||||    
T  14386776 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatgag 14386703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  307 taactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaat 376  Q
    ||||||||||| || |||||| |||||||||||| | | ||||| | |||||| ||||||| ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 24035820 - 24035760
Alignment:
Q  307 taactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccata 367  Q
    |||||||| || |||| |||| |||||||||||||| ||||  | ||||||||||||||||    
T  24035820 taactaatcttaaataattgagtccaagactcttgaacgccgtactccttcatttgccata 24035760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  308 aactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaat 376  Q
    ||||||||||||| | |||| |||| ||||||| | | ||||| | |||||| ||||||||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 428
Target Start/End: Original strand, 25901279 - 25901401
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    ||||||||||||||| | ||||||||||||||||||| | | |||||||||||||| |||||||||||||||  ||  ||  |||||||||| |||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaa 25901378  T
Q  406 agatagcacatcaaaacaacaat 428  Q
    ||  ||  ||||||||| |||||    
T  25901379 agggagtccatcaaaaccacaat 25901401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 428
Target Start/End: Original strand, 25915297 - 25915419
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    ||||||||||||||| | ||||||||||||||||||| | | |||||||||||||| |||||||||||||||  ||  ||  |||||||||| |||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaa 25915396  T
Q  406 agatagcacatcaaaacaacaat 428  Q
    ||  ||  ||||||||| |||||    
T  25915397 agggagtccatcaaaaccacaat 25915419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 4669 - 4773
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| ||||  ||| |||||||||||||| | ||||| | ||||||||||||||||| |||||||||||  |  ||||||||| ||||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaacaa 4768  T
Q  406 agata 410  Q
    |||||    
T  4769 agata 4773  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 27618510 - 27618459
Alignment:
Q  357 catttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaaga 408  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  27618510 cattttccatataacaaaatgagtttgcttaaaatcatgacaaaaacaaaga 27618459  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 42846465 - 42846521
Alignment:
Q  346 ccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaa 402  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||    
T  42846465 ccaaaatccttcatttgccaaataacaaaatgggtttcctcaaaatcatgaaaaaaa 42846521  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 20770720 - 20770620
Alignment:
Q  306 ataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaa 405  Q
    |||||||||||| |  | ||||||||| ||||||| |   ||||| ||||||||||||||||||||||||| |||||  | || ||||||| ||||||||    
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  406 a 406  Q
    |    
T  20770620 a 20770620  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 6935212 - 6935306
Alignment:
Q  300 attgctataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcat 394  Q
    |||| ||||||||||||| |  | || | ||||||| |||||| | ||||| |||||||||||||| |||||| |||| |||| || ||||||||    
T  6935212 attggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcat 6935306  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 6921349 - 6921426
Alignment:
Q  305 tataactaatttttaatagttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagttt 382  Q
    ||||||||||||| |  | |||| ||||||| |||| | | ||||| |||||||||||||| ||||||||||| ||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 6921426  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 19746717 - 19746762
Alignment:
Q  329 tccaagactcttgagcgccaaaatccttcatttgccatataacaaa 374  Q
    |||||||||||||| | ||||| | |||||||||||||||||||||    
T  19746717 tccaagactcttgaactccaaacttcttcatttgccatataacaaa 19746762  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 18964848 - 18964931
Alignment:
Q  324 ttgaatccaagactcttgagcgccaaaatccttcatttgccatataacaaaatgagtttgctcaaaatcatgacaaaaacaaag 407  Q
    |||| ||||||| |||| | | ||||| |||||||||||||||||||  ||||||||||  |||| |||||||  |||||||||    
T  18964848 ttgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgagtaaaacaaag 18964931  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 23086829 - 23086784
Alignment:
Q  329 tccaagactcttgagcgccaaaatccttcatttgccatataacaaa 374  Q
    |||||||||||||| | ||||| |||||||| ||||||||||||||    
T  23086829 tccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

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