View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_low_12 (Length: 425)
Name: NF11817_low_12
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 7485206 - 7484809
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7485206 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
7485107 |
T |
|
| Q |
118 |
aagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaaagttaatttcatattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7485106 |
aagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgtttcacgaaccctttaagcaaaaagttaatttcatattt |
7485007 |
T |
|
| Q |
218 |
ttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7485006 |
ttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattgaggcatgattttgtattataattaaatttttaacgcaaaa |
7484907 |
T |
|
| Q |
318 |
gacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaaaacataatactctctct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7484906 |
gacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacataatactccctctgttcccttaaaaaacataatactctctct |
7484809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 40225834 - 40225954
Alignment:
| Q |
248 |
tattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaaaagacaataatagaaaacatacgaatatttga |
347 |
Q |
| |
|
||||||| ||||| ||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| | |||| || | |
|
|
| T |
40225834 |
tattaaatggttaattaatttgatgaacgaaggcatgattttgtattataataaaaattttaacgctaaagacaataatagaaaacttggtaatacttaa |
40225933 |
T |
|
| Q |
348 |
attaaatacgattacggctaa |
368 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
40225934 |
attaaataggattacggctaa |
40225954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 36113285 - 36113199
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataatta |
301 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| |||||| || || |||||||||||||||||||| |||| |
|
|
| T |
36113285 |
tttttgcatattgaagttttagttggggatgtttattaaatggttatttaattcgatgaacgaaggcatgattttgtattattatta |
36113199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 34380323 - 34379926
Alignment:
| Q |
19 |
ttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34380323 |
ttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattctcaattta |
34380224 |
T |
|
| Q |
119 |
agtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaaagttaatttcatatttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34380223 |
agtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccaggaaaatctttgcttcacgaaccctttaagcaaaaagttaatttcatatttt |
34380124 |
T |
|
| Q |
219 |
tgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34380123 |
tgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattgaggcatgattttgtattataaataaatttttaacgcaaaag |
34380024 |
T |
|
| Q |
319 |
acaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaaaacataatactctctctg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34380023 |
acaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacataatactctctctgttccctcaaaaaacataatactctctctg |
34379926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 15517680 - 15517282
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15517680 |
gttgacccattagaatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
15517581 |
T |
|
| Q |
118 |
aagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaaagttaatttcatattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15517580 |
aagtaaatgattttgttgcgcatatgattttcttgtgtatatgttcccaggaaaatctttgcttcacgaaccctttaagcaaaaagttaatttcatattt |
15517481 |
T |
|
| Q |
218 |
ttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaaaa |
317 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15517480 |
ttacttattgaattttttggtggggatgtttattaaagggttagttaatttgattaattgaggcataattttgtattataattaaatttttaacgcaaaa |
15517381 |
T |
|
| Q |
318 |
gacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaaaacataatactctctctg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15517380 |
gacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacataataccccctatgttccctcaaaaaacataatactctctctg |
15517282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 55936578 - 55936181
Alignment:
| Q |
18 |
gttgacccattaggatagtatat--tttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaat |
115 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55936578 |
gttgactcattaggatagtatatattttaatctttaaagttgatatttaataacttaaatgattttgcaaacaatttatgtaaagggtgttattgtcaat |
55936479 |
T |
|
| Q |
116 |
ttaagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaaagttaatttcatat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
55936478 |
ttaagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccaggaaaatctttgcttcacgaaccctttaaacaaaaaattaatttcatat |
55936379 |
T |
|
| Q |
216 |
ttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55936378 |
ttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattgagacatgattttgtattataattaaatttttaacgcaa |
55936279 |
T |
|
| Q |
316 |
aagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaaaacataatactctct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55936278 |
aagacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacatactactccctctgttccctcaaaaaacataatactctct |
55936181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 52914587 - 52914194
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
117 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52914587 |
gttgacccactaggataatatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacataaagggtgttattgtcaattt |
52914488 |
T |
|
| Q |
118 |
aagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaaagttaatttcatattt |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52914487 |
aagtaaatgattttgttgtgcatatggttttcttgtgcatatgttcgcagaaaaatctttgcttcacgaaccctttaagcaaaaagttaatttcatattt |
52914388 |
T |
|
| Q |
218 |
ttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgcaaaa |
317 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52914387 |
ttccttattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattggggcatgattttgtattataattaaatttttaatgcaaaa |
52914288 |
T |
|
| Q |
318 |
gacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaa-aaaacataatactc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52914287 |
gacaataatagaaaacatacgaatatttgaattaaataagattacggctaacaacataatactccctctgttccctcaaaaaaacataatactc |
52914194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 39537810 - 39537686
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39537810 |
gttgacctattaggatagtatattttaatctttaaagttgatctttaataactcaaatgattttgcaaacaatttacgtaaatggtgttattgtcaattt |
39537711 |
T |
|
| Q |
118 |
aagtaaatgattttgttgcgcatat |
142 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
39537710 |
aagtaaatgattttgttgtgcatat |
39537686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 39534062 - 39533945
Alignment:
| Q |
299 |
ttaaatttttaacgcaaaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaa |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39534062 |
ttaaatttttaatgcaaaagacaataatagaaaacatatgaatatttgaattaaataggattacggctaacaacataatactccctccgttccctcaaat |
39533963 |
T |
|
| Q |
399 |
aacataatactctctctg |
416 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
39533962 |
aacataatactcactctg |
39533945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 23568361 - 23568456
Alignment:
| Q |
19 |
ttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23568361 |
ttgacccactaggatagtatattttaatctttaaagttgatatttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
23568456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 39537690 - 39537594
Alignment:
| Q |
211 |
catatttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39537690 |
catatttttgcctattgaatttttggatggggatgtttatcaaagggttagttaatttgactaattggggcatgattttgtattataattaaatttt |
39537594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 4779250 - 4779403
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||| | || ||||||||| |
|
|
| T |
4779250 |
tttttgcatattgaagttttagttggggatgtttattaaatggttaattaatttgatgaacgaaggcatgattttgtattatagtagaaattttaacgct |
4779349 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaa |
368 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||||||| |||||||||||| |
|
|
| T |
4779350 |
aaagacaataatagaaaacttggtaatactcgaattaaataggattacggctaa |
4779403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 55934760 - 55934704
Alignment:
| Q |
58 |
atctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55934760 |
atctttaataacttaaatgattttgcaaacaatttacgtaaatggtgttattgtcaa |
55934704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 55934787 - 55934753
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaa |
52 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55934787 |
gttgacccactaggatagtatattttaatctttaa |
55934753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 75 - 416
Target Start/End: Original strand, 54595396 - 54595736
Alignment:
| Q |
75 |
tgattttgcaaacaatttacgtaaagggtgttattgtcaatttaagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatc |
174 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54595396 |
tgattttgcaaacaatttatgtaaatggtgttattgtcaatttaagtaaatgattt-gttgcgcatatggttttcttatgtatatgttcccagaaaaatc |
54595494 |
T |
|
| Q |
175 |
tttgattcacgaaccctttaagcaaaaagttaatttcatatttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaa |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54595495 |
tttgcttcacgaaccctttaagcaaaaagttaatttcatatttttgcctattgaatttttgggtggggatgtttattaaatggttagttaatttgactaa |
54595594 |
T |
|
| Q |
275 |
ttaaggcatgattttgtattataattaaatttttaacgcaaaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacat |
374 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54595595 |
ttgaggcatgattttgtattataattaaatttttaatgcaaaagacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacat |
54595694 |
T |
|
| Q |
375 |
aatactccctctgttccctcaaaaaacataatactctctctg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54595695 |
aatactccctctgttccctcaaaaaacataatactctctctg |
54595736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 52866246 - 52866363
Alignment:
| Q |
299 |
ttaaatttttaacgcaaaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctctgttccctcaaaa |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52866246 |
ttaaatttttaaagcaaaagacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacataatactccctccgttccctcaaaa |
52866345 |
T |
|
| Q |
399 |
aacataatactctctctg |
416 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
52866346 |
aacataatactccctctg |
52866363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 52865767 - 52865883
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
52865767 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataactcaaataattttacaaacaattgacgtaaatggtgttattgtcaattt |
52865866 |
T |
|
| Q |
118 |
aagtaaatgattttgtt |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
52865867 |
aagtaaatgattttgtt |
52865883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 52865887 - 52865983
Alignment:
| Q |
211 |
catatttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52865887 |
catatttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattggggcatgattttgtattataattaaatttt |
52865983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 7882441 - 7882345
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7882441 |
gttgacccactatgatagtatattttaatctttaaagttaatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
7882345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 367
Target Start/End: Original strand, 33474310 - 33474462
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||| ||||| ||||||||| || || |||||||||||||||||||| || ||||||||| |
|
|
| T |
33474310 |
tttttgcatattgaagttttctttggggatgtttattaaatggttaattaatttgatgaaccaaagcatgattttgtattataatagaaattttaacgct |
33474409 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggcta |
367 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| ||||||||||| |
|
|
| T |
33474410 |
aaagacaataatagaaaacttggtaatacttgaattaaataggattacggcta |
33474462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 102 - 416
Target Start/End: Original strand, 31023806 - 31024120
Alignment:
| Q |
102 |
gtgttattgtcaatttaagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccagaaaaatctttgattcacgaaccctttaagcaaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
31023806 |
gtgttattgtcaatttaagtaaatgattttgttgcgcatatgattttc---------------caggaaaatctttgcttcacgaaccctttaagcaaaa |
31023890 |
T |
|
| Q |
202 |
agttaatttcatatttttgcctattgaattttt---------------gggtggggatgtttattaaagggttagttaatttgactaattaaggcatgat |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31023891 |
agttaatttcatatttttgcctattgaattttttttttttttttttggggggggggatgtttattaaagggttagttaatttgactaattgaggcatgat |
31023990 |
T |
|
| Q |
287 |
tttgtattataattaaatttttaacgcaaaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaacaacataatactccctct |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31023991 |
tttgtattataattaaatttttaacgcaaaagacaataatagaaaacatacgaatatttgaattaaataggattacggctaacaacataatactccctct |
31024090 |
T |
|
| Q |
387 |
gttccctcaaaaaacataatactctctctg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31024091 |
gttccctcaaaaaacataatactctctctg |
31024120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 8510485 - 8510581
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8510485 |
gttgacccactaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
8510581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 13882663 - 13882759
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13882663 |
gttgacccactaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
13882759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 14022788 - 14022884
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14022788 |
gttgacccactaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
14022884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 13988272 - 13988368
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13988272 |
gttgacgcactaggatagtatattttaatctttaaagttgatatttaataacttaaatgatttttcaaacaatttacgtaaagggtgttattgtcaa |
13988368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 13994170 - 13994266
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13994170 |
gttgacgcactaggatagtatattttaatctttaaagttgatatttaataacttaaatgatttttcaaacaatttacgtaaagggtgttattgtcaa |
13994266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 25948378 - 25948225
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25948378 |
tttttgcatattgaagttttagttggggatgtttattaaatggttatttaatttgatgaacgaaggcatgattttgtattataatagaaattttaacgct |
25948279 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaa |
368 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| |||||||||||| |
|
|
| T |
25948278 |
aaagacaataatagaaaacttggtaatacttgaattaaataagattacggctaa |
25948225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 5853277 - 5853430
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5853277 |
tttttgcatattgaagttttagttggggatgtttattaaatggttaattaatttgatgaacgaaggcatgattttgtattataatagaaattttaacgct |
5853376 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaa |
368 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| |||||| ||||| |
|
|
| T |
5853377 |
aaagacaataatagaaaactttgtaatacttgaattaaataggattacagctaa |
5853430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 16493346 - 16493499
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16493346 |
tttttgcatattgaagttttagttggggatgtttattaaatggttaattaatttgatgaacgaaggcatgattttgtattataatagaaattttaacgct |
16493445 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaa |
368 |
Q |
| |
|
||||| ||||||||||||| | |||| |||||||||||| |||||||||||| |
|
|
| T |
16493446 |
aaagataataatagaaaacttggtaatacttgaattaaataggattacggctaa |
16493499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 22704920 - 22704767
Alignment:
| Q |
215 |
tttttgcctattgaatttttgggtggggatgtttattaaagggttagttaatttgactaattaaggcatgattttgtattataattaaatttttaacgca |
314 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
22704920 |
tttttgcatattgaagttttagttggggatgtttattaaatggttatttaatttgaggaacgaaggcatgattttgtattataatagaaattttaacgct |
22704821 |
T |
|
| Q |
315 |
aaagacaataatagaaaacatacgaatatttgaattaaatacgattacggctaa |
368 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| ||||| |||||| |
|
|
| T |
22704820 |
aaagacaataatagaaaacttggtaatacttgaattaaataggattatggctaa |
22704767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 8042767 - 8042671
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8042767 |
gttgacccactaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
8042671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 23398579 - 23398483
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23398579 |
gttgacccactaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
23398483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 5950174 - 5950270
Alignment:
| Q |
18 |
gttgacccattaggatagtatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
114 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5950174 |
gttgacccactaggataatatattttaatctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa |
5950270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University