View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_13 (Length: 424)
Name: NF11817_low_13
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 26785563 - 26785170
Alignment:
| Q |
18 |
tttcccacacatatgtttcaatctatgagtctcgtcgcgcgctacccacaagaaccgaacaccactatcctgcaatgcagctgcaatttcatccatttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785563 |
tttcccacacatatgtttcaatctatgagtctcgtcgcgcgctacccacaagaaccgaacaccactatcctgcaatgcagctgcaatttcatccatttgt |
26785464 |
T |
|
| Q |
118 |
gttcttgaaaccgatagataactaccatatgaaatgtacaaaacggaaccatcgggttggagatttagccaatcaatgtaactttgagcaataccattta |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
26785463 |
gttcttgaaaccgatagataactgccatatgaaatgtacaaaacggaaccatcgggttggagatttagccaatcaatgtaactttgggcaacaccattta |
26785364 |
T |
|
| Q |
218 |
gagaatgtgatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacttgagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26785363 |
gagaatgtgatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacctgagg |
26785264 |
T |
|
| Q |
318 |
ttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
411 |
Q |
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| T |
26785263 |
ttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
26785170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 26765461 - 26765056
Alignment:
| Q |
18 |
tttcccacacatatgtttcaatctatgagtctcgtcgcgcgctacccacaagaaccgaacaccactatcctgcaatgcagctgcaatttcatccatttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
26765461 |
tttcccacacatatgtttcaatctatgagtctcgtcacgcgttacccacaagaaccgaacaccactatcgtgcaatgcagctgcaatatcatccatttgt |
26765362 |
T |
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| Q |
118 |
gttcttgaaaccgatagataactaccatatgaaatgtacaaaacggaaccatcgggttggagatttagccaatcaatgtaactttgagcaataccatt-- |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| ||| |||||| |
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| T |
26765361 |
gttcttgaaaccgatagataacttccatatgaaatgtacaaaacagaaccattaggttggagatttaaccaatctatgtaactttgggcagcaccattat |
26765262 |
T |
|
| Q |
216 |
----------tagagaatgtgatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatc |
305 |
Q |
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| T |
26765261 |
tagtagcatttagagaatttaagttgtgtccaagattaaagtaaggtatgtttggaccaattgtgtaaattggaattgtgagctttgattttaatgcatc |
26765162 |
T |
|
| Q |
306 |
aattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttgg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26765161 |
aattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaagccattgacaacttttgagagcccattgcaaaatttggtgg |
26765062 |
T |
|
| Q |
406 |
ttgttc |
411 |
Q |
| |
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|||||| |
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|
| T |
26765061 |
ttgttc |
26765056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 31005545 - 31005462
Alignment:
| Q |
289 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccattga |
372 |
Q |
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||||||||||||| |||||| |||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||| |
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| T |
31005545 |
tttgattttaaggtatcaatggcttgagattcaagctcataaattgaagtgaatagaagatattgtgctttgtgaatccattga |
31005462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 32075468 - 32075549
Alignment:
| Q |
289 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaatccatt |
370 |
Q |
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|||||||||||| ||||||| |||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||| |
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| T |
32075468 |
tttgattttaagacatcaatggcttgagattcaagctcataaattgaagagaatagaagatattgtgctttgtgaatccatt |
32075549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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