View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_14 (Length: 388)
Name: NF11817_low_14
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 40311179 - 40311531
Alignment:
| Q |
20 |
ggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgt |
119 |
Q |
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||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311179 |
ggttcaagaccttcatggatgatgaggggttgaagggtggagacgaaatttcatcttctctaatcaaagcaattgaggcatcaaggatttcagttattgt |
40311278 |
T |
|
| Q |
120 |
tttctctaaaaaatttgcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttt |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311279 |
tttctctaaaaaaattgcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttt |
40311378 |
T |
|
| Q |
220 |
tataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311379 |
tataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttac |
40311478 |
T |
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| Q |
320 |
agacatggaggtcagctttacttgaagttgctagcttgagtggaataacttac |
372 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311479 |
agatatggaggtcagctttacttgaagttgctagcttgagtggaataacttac |
40311531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 40283531 - 40283869
Alignment:
| Q |
20 |
ggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgt |
119 |
Q |
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||||||||||||||||||||||||||||| |||| || ||| | |||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
40283531 |
ggttcaagaccttcatggatgatgaggaactgaaaggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaaggatttcaattgttgt |
40283630 |
T |
|
| Q |
120 |
tttctctaaaaaatttgcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttgccgattttt |
219 |
Q |
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||| ||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||| |
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| T |
40283631 |
tttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaaaaggttttgccaatcttt |
40283730 |
T |
|
| Q |
220 |
tataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttgagaagttac |
319 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| || |||| |||||| ||||||| ||||||| || |
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| T |
40283731 |
tacaaaatagaaccgtccgatgtaaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttggaaatgactctgagaaggtaa |
40283830 |
T |
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| Q |
320 |
agacatggaggtcagctttacttgaagttgctagcttga |
358 |
Q |
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|| |||||||||||||||| ||||||||||| ||||| |
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| T |
40283831 |
aggaatggaggtcagctttatctgaagttgctaacttga |
40283869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 40326450 - 40326802
Alignment:
| Q |
11 |
gtcgagagaggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttc |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326450 |
gtcgagaggggttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttc |
40326549 |
T |
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| Q |
111 |
agttattgttttctctaaaaaatttgcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaaccaacagattttg |
210 |
Q |
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| || ||||||||||| |||| |||||| ||||| | |||||||||||||||||||||||||| || ||||| || ||| ||||||||||||||||||| |
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| T |
40326550 |
aattgttgttttctctgaaaactttgcagattctccctggtgtctagatgaattggtcactatgctaaagtgcaaggagaggaagaaccaacagattttg |
40326649 |
T |
|
| Q |
211 |
ccgattttttataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttggtaatgactttg |
310 |
Q |
| |
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|| || ||||| ||||||||||| || ||||| ||||||| ||| ||||||| || || ||| |||| || | | || |||||| ||||||| || |
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| T |
40326650 |
ccaatcttttacaaaatagaaccatcttgggtaagacatcagagaaatagttatggaaaagccatgactaagcatgaagaagagtttggaaatgactctg |
40326749 |
T |
|
| Q |
311 |
agaagttacagacatggaggtcagctttacttgaagttgctagcttgagtgga |
363 |
Q |
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| ||| | | | |||||||||||||||| ||||||||||| |||||||||| |
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| T |
40326750 |
aaaaggtgaataaatggaggtcagctttatgtgaagttgctaacttgagtgga |
40326802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 40362392 - 40362501
Alignment:
| Q |
22 |
ttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttt |
121 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||| || |||||||| | ||||| ||||||||||||| ||||||| ||||| || |||||| |
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| T |
40362392 |
ttcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttt |
40362491 |
T |
|
| Q |
122 |
tctctaaaaa |
131 |
Q |
| |
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| ||| |||| |
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| T |
40362492 |
tgtctgaaaa |
40362501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 40409142 - 40409274
Alignment:
| Q |
30 |
cttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaa |
129 |
Q |
| |
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||||||||||||||||| |||||||||||| || |||||||| | || || ||||||||||||| ||||||| ||||| || ||||||| ||| || |
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| T |
40409142 |
cttcatggatgatgagggattgaagggtggaaaccaaatttcacaaactttactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaa |
40409241 |
T |
|
| Q |
130 |
aaatttgcacattcttcttggtgtctagatgaa |
162 |
Q |
| |
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|| |||| | |||| | |||||||| |||||| |
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| T |
40409242 |
aactttggatattccacatggtgtcttgatgaa |
40409274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 40406425 - 40406565
Alignment:
| Q |
22 |
ttcaagaccttcatggatgatgaggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcagttattgttt |
121 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||| || |||||||| | |||| || |||||||||| ||||||| ||||| || |||||| |
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| T |
40406425 |
ttcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactcttctcgaagcaattgaaaaatcaaggctttcaattgttgttt |
40406524 |
T |
|
| Q |
122 |
tctctaaaaaatttgcacattcttcttggtgtctagatgaa |
162 |
Q |
| |
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| ||| |||| |||| | |||| | |||||||| |||||| |
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| T |
40406525 |
tgtctgaaaactttggatattccacgtggtgtcttgatgaa |
40406565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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