View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_15 (Length: 382)
Name: NF11817_low_15
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 9999332 - 9999684
Alignment:
| Q |
22 |
agactatgtaaaatccaatgatttttcatatgcaattgtgatagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatttct |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9999332 |
agactatgtaaaatccaatgatttttcatatgcaattgtgatagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatctct |
9999431 |
T |
|
| Q |
122 |
ggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgaga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999432 |
ggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgaga |
9999531 |
T |
|
| Q |
222 |
aaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaag |
321 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999532 |
aaattgaaggacttgtggatgattggcttcctggtagtgaaggttctggtgttgccgatgttttgtttggtgattatggatttaccggtaaacttccaag |
9999631 |
T |
|
| Q |
322 |
gacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
374 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9999632 |
gacatggtttaagactgttgatcagttaccaatgaatgttggtgattctcatt |
9999684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 26 - 374
Target Start/End: Original strand, 10005484 - 10005832
Alignment:
| Q |
26 |
tatgtaaaatccaatgatttttcatatgcaattgtgatagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatttctggac |
125 |
Q |
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| T |
10005484 |
tatgtaaaattcaatgatttttcatatgcaattgtggtagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatctctggac |
10005583 |
T |
|
| Q |
126 |
atggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005584 |
atggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgagaaaat |
10005683 |
T |
|
| Q |
226 |
tgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggaca |
325 |
Q |
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| T |
10005684 |
tgaaggacttgtggttgcttggcttcctggtagtgaaggttctggtgttgccgatgttttgtttggtgattatggatttaccggtaaacttccaaggaca |
10005783 |
T |
|
| Q |
326 |
tggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005784 |
tggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
10005832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 9992377 - 9992729
Alignment:
| Q |
22 |
agactatgtaaaatccaatgatttttcatatgcaattgtgatagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatttct |
121 |
Q |
| |
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|||||| |||||||||||||||||||| |||||| | ||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
9992377 |
agactacgtaaaatccaatgatttttcgtatgcagtcgtggtagttggagagacaccatacgctgaaacaaatggcgacagcttgaacttaacaatttcc |
9992476 |
T |
|
| Q |
122 |
ggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttgaga |
221 |
Q |
| |
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|| | ||| ||||| ||| ||||||||||| || ||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||| | | |
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| T |
9992477 |
ggtaacggaacagaaacaataaacaatgtatgcggcagagtgaaatgtgtcgttgtgttagtcactggtagacctgttgccatacaaccatatcttaaca |
9992576 |
T |
|
| Q |
222 |
aaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaag |
321 |
Q |
| |
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||||||| ||||| || |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| | || |
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| T |
9992577 |
aaattgacggactcgttgctgcttggcttcctggtagtgaaggtactggtgttgctgatgttttgtttggtgattatggatttactggtaagcttgctag |
9992676 |
T |
|
| Q |
322 |
gacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992677 |
gacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
9992729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 10013818 - 10014162
Alignment:
| Q |
19 |
tcaagactatgtaaaatccaatgatttttcatatgcaattgtgatagttggagagacaccatatgctgaaacaaatggtgacagcttaaacttaacaatt |
118 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| || ||| || |
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| T |
10013818 |
tcaagactatgtaaaatccaatggtttttcatatgcaattgtggtagttggagagaaaccatatgctgaaacagatggtgacagcttaaatttgacactt |
10013917 |
T |
|
| Q |
119 |
tctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaatcaccggtagacctattgttatacaaccatatcttg |
218 |
Q |
| |
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||| ||||||| ||||| || | ||||||||| ||| |||||||||||| ||||| |||||| | || |||||| ||||||||||||||| |||| |
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| T |
10013918 |
cctgcacatggaatagaaacaatcaaaaatgtatgcggcgcagtgaaatgtgttgttgtcttaatctctggaagacctgttgttatacaaccatttcttc |
10014017 |
T |
|
| Q |
219 |
agaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttcc |
318 |
Q |
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| || ||||| ||||| || || | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
10014018 |
acaacattgacggactcgttgcggcttggcttcctggtagtgaaggtactggtgttgctgatgttttgtttggtgattatggatttactggtaagctttc |
10014117 |
T |
|
| Q |
319 |
aaggacatggtttaagactgttgatcagttgccaatgaatgttgg |
363 |
Q |
| |
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||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
10014118 |
aaggacatggtttaagactgtccatcagttaccgatgaatgttgg |
10014162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 33353383 - 33353243
Alignment:
| Q |
234 |
ttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaa |
333 |
Q |
| |
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|||| ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || || || || |||||||| |||||||| || |
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| T |
33353383 |
ttgttgctggttggctaccaggtagtgaaggacaaggtgtggctgatgttttatttggtgattatggtttcacaggaaagcttccaagaacatggttcaa |
33353284 |
T |
|
| Q |
334 |
gactgttgatcagttgccaatgaatgttggtgattctcatt |
374 |
Q |
| |
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| ||||||||| | |||||||||||||| ||| |||||| |
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| T |
33353283 |
aagtgttgatcaacttccaatgaatgttggagatcctcatt |
33353243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 11244412 - 11244309
Alignment:
| Q |
269 |
ggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgatt |
368 |
Q |
| |
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||||| || |||||| | |||||||| ||||| || || ||||||||| ||||||||||||| || |||| ||||| | |||||||||||||| ||| |
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| T |
11244412 |
ggtgtggcagatgttctttttggtgactatggtttcactggtaaacttgcaaggacatggttcaaatctgtcgatcaactcccaatgaatgttggagatc |
11244313 |
T |
|
| Q |
369 |
ctca |
372 |
Q |
| |
|
|||| |
|
|
| T |
11244312 |
ctca |
11244309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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