View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11817_low_16 (Length: 366)

Name: NF11817_low_16
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11817_low_16
NF11817_low_16
[»] chr3 (19 HSPs)
chr3 (4-353)||(22367193-22367543)
chr3 (1-342)||(22467217-22467559)
chr3 (1-337)||(22357268-22357605)
chr3 (1-350)||(22435897-22436247)
chr3 (34-342)||(22442039-22442350)
chr3 (1-349)||(22353081-22353427)
chr3 (28-348)||(22430464-22430784)
chr3 (1-341)||(22629712-22630048)
chr3 (28-350)||(22634803-22635122)
chr3 (28-342)||(37930156-37930468)
chr3 (120-341)||(22457875-22458096)
chr3 (120-341)||(22480856-22481077)
chr3 (279-338)||(22620429-22620488)
chr3 (279-338)||(30988838-30988897)
chr3 (279-338)||(22647717-22647776)
chr3 (292-353)||(21931280-21931341)
chr3 (279-338)||(21946498-21946557)
chr3 (279-352)||(22053567-22053639)
chr3 (279-352)||(22105569-22105641)
[»] chr1 (4 HSPs)
chr1 (279-338)||(2305019-2305078)
chr1 (279-338)||(34976245-34976304)
chr1 (279-338)||(34983356-34983415)
chr1 (279-338)||(34990091-34990150)
[»] chr4 (1 HSPs)
chr4 (29-103)||(29604729-29604803)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 353
Target Start/End: Original strand, 22367193 - 22367543
Alignment:
Q  4 cctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccatt 102  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  22367193 cctatattttgtagggatcgtccttacaaaggatttaagtaatgttttaggttcgagaactagcagcgatcgaacatgtgagctttcaataccttccatt 22367292  T
Q  103 agattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcat 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  22367293 agattatcagaacttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtctgtcctcggtaatactcttgcaaaagcttaaatcctcat 22367392  T
Q  203 gtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggat 302  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  22367393 gtttattaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctactcgcaccaaacttctacggat 22367492  T
Q  303 caactctattaaatgtccttctgcaacctcttccaatgtcattcccctttc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22367493 caactctattaaatgtccttctgcaacctcttccaatgtcattcccctttc 22367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 22467217 - 22467559
Alignment:
Q  1 ccgcctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttcc 99  Q
    ||||||||||||||||| ||||||| | ||||||||||||||| |||| || |||  || ||  ||||| ||| |||||||||||  ||||||| ||| |    
T  22467217 ccgcctatattttgtagggatcgtccttacaaaggatttaagtgatgtctttggtgtgaaaataagcagtgatcgaacatgtgagttttcaataactttc 22467316  T
Q  100 attagattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcct 199  Q
    |||| |||||||||  | | | ||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||| |||||||||| ||||||||||    
T  22467317 attaaattatcagaggtagtttctattgataggcgtcgaatcattccagttaaagacaattgtttgtcctcagtaatattcttgcaaaaacttaaatcct 22467416  T
Q  200 catgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatg 299  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| | ||   | ||||||||||||||||||||||    
T  22467417 catatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttattgaaactacttgcaccaaacttctatg 22467516  T
Q  300 gatcaactctattaaatgtccttctgcaacctcttccaatgtc 342  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  22467517 gatcaactctattaaatatccttcagcaacctcttccaatgtc 22467559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 22357268 - 22357605
Alignment:
Q  1 ccgcctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttcc 99  Q
    ||||||||||||||||| ||||||| | |||||||||| |||| || ||| |||||||| ||| ||||  ||| |||||||||||| |||||||||||||    
T  22357268 ccgcctatattttgtagggatcgtctttacaaaggattcaagtgatctttgaggttcgaaaacaagcaatgatcgaacatgtgagctttcaataccttcc 22357367  T
Q  100 attagattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcct 199  Q
    ||| |||||||| |  | | ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||| |||||||||||||| ||    
T  22357368 attcgattatcataattgggtgctattgataggcgtcgaatcattccagttaaagacaattgtttgccctcagtaatattctcgcaaaagcttaaatgct 22357467  T
Q  200 catgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatg 299  Q
     |||||| |||||||||||| |||||||||||||||||||||| ||||  | |||||||||||||||| ||||   ||||||||||||||||||||||||    
T  22357468 tatgtttttcaaggatcatttcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatg 22357567  T
Q  300 gatcaactctattaaatgtccttctgcaacctcttcca 337  Q
     || |||||| |||||| ||||||||||||||||||||    
T  22357568 tattaactcttttaaatatccttctgcaacctcttcca 22357605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 22435897 - 22436247
Alignment:
Q  1 ccgcctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttcc 99  Q
    |||||||||||||| || ||||| | | |||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  22435897 ccgcctatattttgcagggatcgcccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 22435996  T
Q  100 attagattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcct 199  Q
    |||||||||| ||| || | ||| ||||||||||||||| ||| || |||| |||  ||||| ||| |||| |||||| |||||||||| ||||||||||    
T  22435997 attagattataagaactggttgccattgataggcgtcgagtcactctagttaaagaaaattgattgtcctcagtaatattcttgcaaaaacttaaatcct 22436096  T
Q  200 catgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatg 299  Q
    ||| ||| |||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||| | ||   | |||| ||||||||||||||||     
T  22436097 catatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttattgaaactacatgcaccaaacttctatt 22436196  T
Q  300 gatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccct 350  Q
    || |||||||||||||| ||||| |||||  |||||||||||| |||||||    
T  22436197 gaccaactctattaaatatccttttgcaatatcttccaatgtccttcccct 22436247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 34 - 342
Target Start/End: Original strand, 22442039 - 22442350
Alignment:
Q  34 gatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccatta---gattatcagaccttgatgctattgata 130  Q
    |||| |||| ||| ||||||||||||||| ||||| ||| ||||||||||||  || || ||||||||||   ||||||||||  | | |||||||||||    
T  22442039 gattcaagtgatgctttaggttcgagaacaagcagtgatcgaacatgtgagctatctattccttccattattagattatcagaattgggtgctattgata 22442138  T
Q  131 ggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactag 230  Q
    |||||||||||||||||||| ||| ||||||||| ||||| |||||| ||| |||||||||||||| || |||||| |||||||||||| ||||||||||    
T  22442139 ggcgtcgaatcattccagttaaagacaattgttttccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactag 22442238  T
Q  231 atcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacc 330  Q
    |||||||||||||||||| | |||||||||||||||| || |   | ||||||||||||||||||||  ||| ||| || |||||| |||||||||||||    
T  22442239 atcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaacc 22442338  T
Q  331 tcttccaatgtc 342  Q
    | ||||||||||    
T  22442339 ttttccaatgtc 22442350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 22353081 - 22353427
Alignment:
Q  1 ccgcctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttcc 99  Q
    ||||||||||||||||| ||||||| | ||||||||||| ||| |||||||| ||   ||||| ||||| ||| |||||||||||  |||||||| || |    
T  22353081 ccgcctatattttgtagggatcgtccttacaaaggattttagtgatgttttatgtctcagaacaagcagtgatcgaacatgtgagttttcaatacttttc 22353180  T
Q  100 attagattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcct 199  Q
    ||||  |||||||| || | ||||||||||||||||| ||||||||||||| | | || |||||||| |   |||||| |||||||||| ||||||||||    
T  22353181 attaacttatcagaactagttgctattgataggcgtcaaatcattccagttaatgacagttgtttgctc---gtaatattcttgcaaaaacttaaatcct 22353277  T
Q  200 catgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatg 299  Q
    ||| |||   |||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||| |||    ||||||||||||||||||||||||    
T  22353278 catattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgactgaatctacttgcaccaaacttctatg 22353377  T
Q  300 gatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccc 349  Q
    ||| |||||| |||||| |||||||||||||||||||| |||| ||||||    
T  22353378 gattaactcttttaaatatccttctgcaacctcttccattgtccttcccc 22353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 28 - 348
Target Start/End: Original strand, 22430464 - 22430784
Alignment:
Q  28 acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccattagattatcagaccttgatgctattg 127  Q
    |||||||||| |||| ||||||||  |  |||||| ||||  ||| ||||||||| |  ||||||||||||||||||| || | ||  | | ||||||||    
T  22430464 acaaaggattcaagtgatgttttatttgtgagaacaagcactgatcgaacatgtgggttttcaataccttccattagaatacctgaattgggtgctattg 22430563  T
Q  128 ataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcac 227  Q
    |||||||| |||||||||||||| ||  |||||| |||  |||||| |||  ||| ||||||||||||||||||| ||| | |||||||||| |||||||    
T  22430564 ataggcgttgaatcattccagttaaatacaattgattgttctcggtgatatacttacaaaagcttaaatcctcatattttttaaggatcatttcatgcac 22430663  T
Q  228 tagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgca 327  Q
    ||||||||||||||| |||||   |||||||||||||||| | ||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22430664 tagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgca 22430763  T
Q  328 acctcttccaatgtcattccc 348  Q
    ||||||| ||||||| |||||    
T  22430764 acctctttcaatgtccttccc 22430784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 22629712 - 22630048
Alignment:
Q  1 ccgcctatattttgtagcgatcgtcgt-acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttcc 99  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||| |||| || |||  || ||| ||||| ||| |||||||||||  |||||||| || |    
T  22629712 ccgcctatattttgtagggattgtctttacaaaggatttaagtgatgtatttggtgtgaaaacaagcagtgatcgaacatgtgagttttcaatacttttc 22629811  T
Q  100 attagattatcagaccttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcct 199  Q
    |||| ||||||||   | | ||||||||||||||||| ||||||||||||| ||| |||||| ||| ||||  ||||| |||||||||| ||||||||||    
T  22629812 attaaattatcag---tagttgctattgataggcgtcaaatcattccagttaaagacaattgcttgtcctcaataatattcttgcaaaaacttaaatcct 22629908  T
Q  200 catgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatg 299  Q
    ||| ||| ||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||  ||| |  |   | |||||||||||||||||||| |    
T  22629909 catatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat--atacttgttgaaactacttgcaccaaacttctacg 22630006  T
Q  300 gatcaactctattaaatgtccttctgcaacctcttccaatgt 341  Q
    || |||||||||||||| ||||||| ||||||||||||||||    
T  22630007 gaccaactctattaaatatccttctccaacctcttccaatgt 22630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 350
Target Start/End: Original strand, 22634803 - 22635122
Alignment:
Q  28 acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccattagattatcagaccttgatgctattg 127  Q
    |||||||||| || | |||||| |||||||||||  ||||  ||| ||| |  ||||| ||||||| ||||| |||||||||||||  | ||||||||||    
T  22634803 acaaaggattcaactgatgtttgaggttcgagaataagcaatgatcgaatacttgagctttcaatatcttcccttagattatcagaattggatgctattg 22634902  T
Q  128 ataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcac 227  Q
    |||| ||||||||||||||||  ||   ||||| ||||||||    |||| |||||||||| |||||||||| |  ||| |||||||||||| |||||||    
T  22634903 atagacgtcgaatcattccagcagac--caatt-tttgcccttaaaaatattcttgcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcac 22634999  T
Q  228 tagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgca 327  Q
    |||||||||||| |||||||| | |||||||||||||||| |  |   | ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  22635000 tagatcatgaacgcggcaactttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgca 22635099  T
Q  328 acctcttccaatgtcattcccct 350  Q
    |||||||| |||||| |||||||    
T  22635100 acctcttcaaatgtccttcccct 22635122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 37930156 - 37930468
Alignment:
Q  28 acaaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccattagattatcagaccttgatgctattg 127  Q
    ||||||||||| ||| |||||| |||||| ||||  ||||| ||| ||||| |||| | ||||||||||||||||||||||| |||  | | ||||||||    
T  37930156 acaaaggatttgagtgatgtttgaggttctagaataagcagtgatcgaacacgtgaactttcaataccttccattagattattagaattgggtgctattg 37930255  T
Q  128 ataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatc-aaggatcattgcatgca 226  Q
    ||||||||| ||| ||||| ||   || ||||| ||||||||  |||||| ||| |||||| |||||||||  |  ||| || |||||||||| ||||||    
T  37930256 ataggcgtcaaattattccggt---agacaattttttgccctaagtaatattctcgcaaaaacttaaatccataaatttgtcaaaggatcatttcatgca 37930352  T
Q  227 ctagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgc 326  Q
    |||||||||||||||| ||||| | ||||||||||||||||  | |   | ||||||||||||||||||||  ||| |||||| |||||| |||||| ||    
T  37930353 ctagatcatgaacacgacaactttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgc 37930452  T
Q  327 aacctcttccaatgtc 342  Q
    ||||| ||||||||||    
T  37930453 aaccttttccaatgtc 37930468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 341
Target Start/End: Original strand, 22457875 - 22458096
Alignment:
Q  120 tgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcatt 219  Q
    |||||||||||||||||||| ||| ||| || |||   |||| |   ||||| ||||| |||||||||| ||||| || |||  ||| |||||||||| |    
T  22457875 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 22457974  T
Q  220 gcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtc 319  Q
    |||||||| |||||||||||||  ||||| | | |||||||||||||| | ||   | ||||||||||||||| ||||  |||||| ||| |||||| ||    
T  22457975 gcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 22458074  T
Q  320 cttctgcaacctcttccaatgt 341  Q
    | |||||||| |||||||||||    
T  22458075 catctgcaacatcttccaatgt 22458096  T

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Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 341
Target Start/End: Original strand, 22480856 - 22481077
Alignment:
Q  120 tgctattgataggcgtcgaatcattccagttgaaggcaattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcatt 219  Q
    |||||||||||||||||||| ||| ||| || |||   |||| |   ||||| ||||| |||||||||| ||||| || |||  ||| |||||||||| |    
T  22480856 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 22480955  T
Q  220 gcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtc 319  Q
    |||||||| |||||||||||||  ||||| | | |||||||||||||| | ||   | ||||||||||||||| ||||  |||||| ||| |||||| ||    
T  22480956 gcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 22481055  T
Q  320 cttctgcaacctcttccaatgt 341  Q
    | |||||||| |||||||||||    
T  22481056 catctgcaacatcttccaatgt 22481077  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 22620429 - 22620488
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||    
T  22620429 tacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaa 22620488  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 30988838 - 30988897
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||    
T  30988838 tacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaa 30988897  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 22647717 - 22647776
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    |||||| |||||||||||||||||||||||  |||||| || ||||||||| ||||||||    
T  22647717 tacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaa 22647776  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 21931341 - 21931280
Alignment:
Q  292 cttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttc 353  Q
    |||||||||||||||||| |||||| ||||||||| || |||||||| ||||| ||| ||||    
T  21931341 cttctatggatcaactctgttaaatatccttctgccacttcttccaaagtcatccccttttc 21931280  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 21946557 - 21946498
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    |||||| ||||  |||||||||||||||||| |||||| ||||||||| || ||||||||    
T  21946557 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcttccaa 21946498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 22053639 - 22053567
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattccccttt 352  Q
    |||||| ||||  ||||||||||||||||||  ||||| ||||||||| || |||||||| ||| |||||||||    
T  22053639 tacttgaaccaggcttctatggatcaactctgataaatatccttctgccacttcttccaaagtc-ttccccttt 22053567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 22105641 - 22105569
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattccccttt 352  Q
    |||||| ||||  |||||||||||||||||| |||||| ||||||||| || || ||||| ||| |||||||||    
T  22105641 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcgtccaaagtc-ttccccttt 22105569  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 2305019 - 2305078
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    ||||||||||||||||| | | |||||||||  ||||| |||||||||||| ||||||||    
T  2305019 tacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaa 2305078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 34976304 - 34976245
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    ||||||||||||||||| | | ||||||||| |||||| ||||| |||||| ||||||||    
T  34976304 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 34983415 - 34983356
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    ||||||||||||||||| | | ||||||||| |||||| ||||| |||||| ||||||||    
T  34983415 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34983356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 34990150 - 34990091
Alignment:
Q  279 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 338  Q
    ||||||||||||||||||| | ||||||||| |||||| || |||| |||| ||||||||    
T  34990150 tacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaa 34990091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 29604729 - 29604803
Alignment:
Q  29 caaaggatttaagtaatgttttaggttcgagaactagcagcgattgaacatgtgagccttcaataccttccatta 103  Q
    ||||||||| ||||||||||||||||  | |||| |  || ||| |||||||||||  |||||||||||||||||    
T  29604729 caaaggattcaagtaatgttttaggtgggtgaacaaaaagtgatcgaacatgtgagttttcaataccttccatta 29604803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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