View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11817_low_21 (Length: 237)

Name: NF11817_low_21
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11817_low_21
NF11817_low_21
[»] chr3 (15 HSPs)
chr3 (1-225)||(22366919-22367143)
chr3 (1-225)||(22435626-22435850)
chr3 (62-225)||(22441740-22441903)
chr3 (1-225)||(22466943-22467167)
chr3 (6-225)||(22629438-22629657)
chr3 (1-225)||(22356985-22357218)
chr3 (1-225)||(22352806-22353031)
chr3 (136-225)||(22634453-22634542)
chr3 (1-116)||(22430271-22430386)
chr3 (139-225)||(37929751-37929837)
chr3 (59-114)||(37929965-37930020)
chr3 (65-114)||(22634612-22634661)
chr3 (66-225)||(22614263-22614416)
chr3 (141-223)||(22457495-22457577)
chr3 (141-223)||(22480476-22480558)
[»] chr4 (1 HSPs)
chr4 (140-221)||(29604430-29604511)
[»] chr1 (2 HSPs)
chr1 (144-179)||(34976782-34976817)
chr1 (144-225)||(34990658-34990739)
[»] chr5 (1 HSPs)
chr5 (64-110)||(27373765-27373811)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22367143 - 22366919
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctaga 100  Q
    ||||||||||||||||||||||||||| ||||  |||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  22367143 atttaggaagtttgaaccacttgaaatatttttggttcagggggaatggagaaagaaattctgaacttccaaaatccattggcatgcttgtgaacctaga 22367044  T
Q  101 gactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtct 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22367043 gactttggatttaagagaaacagagtttaaaaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtct 22366944  T
Q  201 ttgattaagttgaaggatggtattg 225  Q
    |||||| ||||||||||||||||||    
T  22366943 ttgattgagttgaaggatggtattg 22366919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22435850 - 22435626
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctaga 100  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22435850 atttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccaaaatccattggcatgctcgtgaacctaga 22435751  T
Q  101 gactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtct 200  Q
    ||||||||||||||||   ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||  | |||||    
T  22435750 gactttggatttaagatctacagagtttgaaaatcgtaatatgccaaaggaggtttgcaagcttagaaagctacgtcattttttaggcgattctctgtct 22435651  T
Q  201 ttgattaagttgaaggatggtattg 225  Q
    |||||| | ||||||||||||||||    
T  22435650 ttgattcatttgaaggatggtattg 22435626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 22441903 - 22441740
Alignment:
Q  62 tgaacttccaaaatccattggcatgcttgtgaacctagagactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaag 161  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||  || |  ||||||||| |||||||||||||||    
T  22441903 tgaacttccaaaatccattggcatgctcgtgaacctagagactttggatttaagagatacatattttgtaaatgataatatgccgaaggagatttgcaag 22441804  T
Q  162 cttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtattg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22441803 cttagaaagctacgccattttttaggctatcgtatgtctttgattgagttgaaggatggtattg 22441740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22467167 - 22466943
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctaga 100  Q
    |||| |||||||||||||||||||||| | || ||||| || ||||||||| || |||||||| |||||||||||||||||||||| | |  ||| ||||    
T  22467167 atttgggaagtttgaaccacttgaaatatcttgagttcgggatgattggaggaagatattctggacttccaaaatccattggcatgatcgcaaacttaga 22467068  T
Q  101 gactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtct 200  Q
    |||||||||||||||| | |   | | | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  22467067 gactttggatttaagatatagcaattatgaaattcgtgatatgccaaaggagatttgcaagcttagaaagctacgccatttattaggcgattgtatgtct 22466968  T
Q  201 ttgattaagttgaaggatggtattg 225  Q
    |||||| ||||||||||||||||||    
T  22466967 ttgattcagttgaaggatggtattg 22466943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 22629657 - 22629438
Alignment:
Q  6 ggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctagagactt 105  Q
    |||||||||||||||||||||| |||| |||||  | ||||||||| || | ||| || | |||||||||||||||||||||| ||||||||||||||||    
T  22629657 ggaagtttgaaccacttgaaatattttgagttcctgatgattggaggaagagattttggaattccaaaatccattggcatgctcgtgaacctagagactt 22629558  T
Q  106 tggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgat 205  Q
    ||||||||||| | | |  |  | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  22629557 tggatttaagacatagaatgactgaaaatcgtaatatgccaaaggagatttgcatgcttagaaagctacgccattttttaggcattcgtatgtctttgat 22629458  T
Q  206 taagttgaaggatggtattg 225  Q
    | ||||||||||| ||||||    
T  22629457 tgagttgaaggatagtattg 22629438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22357218 - 22356985
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctg---------aacttccaaaatccattggcatgcttgt 91  Q
    |||| |||||||||||||||||||||| ||||  ||||   |||||||||||||||||| ||          || |||||||||||||||||||||| ||    
T  22357218 atttgggaagtttgaaccacttgaaatattttgggttctttgtgattggagaaacatatcctatatttccaaaaattccaaaatccattggcatgctcgt 22357119  T
Q  92 gaacctagagactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctat 191  Q
    |||||||||||||||||||||||||    || | ||| ||  || ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |     
T  22357118 gaacctagagactttggatttaagatctccaaaatttgaacatcctaatatgccgaaggagatttgcaagcttagaaagctacgccatttattaggcaac 22357019  T
Q  192 cgtatgtctttgattaagttgaaggatggtattg 225  Q
      ||||||||||||| ||||||||||||||||||    
T  22357018 tttatgtctttgattcagttgaaggatggtattg 22356985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22353031 - 22352806
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattc---tgaacttccaaaatccattggcatgcttgtgaacct 97  Q
    |||| |||| ||||||||| ||||||| ||   ||||| || ||||||||| || ||||||   || |||||||||||||||||||||||| ||||||||    
T  22353031 atttgggaaatttgaaccatttgaaatattg--agttctggatgattggaggaagatattcaactggacttccaaaatccattggcatgctcgtgaacct 22352934  T
Q  98 agagactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatg 197  Q
    ||||||||||||||||||||   ||  |||   | | |||||||||  ||||||||||||||||||||||||| ||||||||||||||||| | |  |||    
T  22352933 agagactttggatttaagagttgcactgttcgcattgcgtaatatgttaaaggagatttgcaagcttagaaagttacgccattttttaggcaaccaaatg 22352834  T
Q  198 tctttgattaagttgaaggatggtattg 225  Q
    ||||||||| | ||||| ||||||||||    
T  22352833 tctttgattcaattgaaagatggtattg 22352806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 22634542 - 22634453
Alignment:
Q  136 gtaatatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtattg 225  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||  |||||| ||||| ||||||||||||||||||    
T  22634542 gtaatatgcccaaggagatttgcaagcttaaaaagctacgccattttataggctatcaaatgtctctgattcagttgaaggatggtattg 22634453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 22430386 - 22430271
Alignment:
Q  1 atttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctaga 100  Q
    |||| |||||||| ||||||||||||| ||||  ||||  ||||| ||||   | ||||||| ||||||||||||||||||||||||| |||||||||||    
T  22430386 atttgggaagtttaaaccacttgaaatattttgggttctaggtgaatggaagtagatattctaaacttccaaaatccattggcatgctagtgaacctaga 22430287  T
Q  101 gactttggatttaaga 116  Q
    ||||||||||||||||    
T  22430286 gactttggatttaaga 22430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 37929837 - 37929751
Alignment:
Q  139 atatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtattg 225  Q
    ||||||| |||||||||||||||||||||||||||||   ||||||||||| |   |||||||||||| ||||||||||||||||||    
T  37929837 atatgccgaaggagatttgcaagcttagaaagctacgttgttttttaggctctgaaatgtctttgattcagttgaaggatggtattg 37929751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 37930020 - 37929965
Alignment:
Q  59 ttctgaacttccaaaatccattggcatgcttgtgaacctagagactttggatttaa 114  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37930020 ttctggacttccaaaatccattggcatgctcgtgaacctagagactttggatttaa 37929965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 22634661 - 22634612
Alignment:
Q  65 acttccaaaatccattggcatgcttgtgaacctagagactttggatttaa 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22634661 acttccaaaatccattggcatgctcgtgaacctagagactttggatttaa 22634612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 22614416 - 22614263
Alignment:
Q  66 cttccaaaatccattggcatgcttgtgaacctagagactttggatttaagagaaacagagtttaaaattcgtaatatgccaaaggagatttgcaagctta 165  Q
    |||||||||||||||||||||||    |||||||||||||||||| ||||||  ||||      | || | | | |||||||| |||||| |||||||||    
T  22614416 cttccaaaatccattggcatgctccaaaacctagagactttggatgtaagaggtacag------atatccatgagatgccaaaagagattagcaagctta 22614323  T
Q  166 gaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtattg 225  Q
    |||||||||  ||| ||  ||| |||   |||||||| ||||| ||||||||||||||||    
T  22614322 gaaagctactacatcttcgaggttatacaatgtctttcattaaattgaaggatggtattg 22614263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 22457577 - 22457495
Alignment:
Q  141 atgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtat 223  Q
    ||||| || ||||| ||||||||||||||| ||||||||||  |||||||   ||||||||||||| | || || ||||||||    
T  22457577 atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtat 22457495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 22480558 - 22480476
Alignment:
Q  141 atgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtat 223  Q
    ||||| || ||||| ||||||||||||||| ||||||||||  |||||||   ||||||||||||| | || || ||||||||    
T  22480558 atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtat 22480476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 29604511 - 29604430
Alignment:
Q  140 tatgccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggt 221  Q
    |||||| |||||||||||||||||||||||||| ||||||||| ||||||   ||||||||| |||| | ||||||||||||    
T  29604511 tatgccgaaggagatttgcaagcttagaaagctgcgccattttctaggcttgagtatgtcttggattcaattgaaggatggt 29604430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 34976782 - 34976817
Alignment:
Q  144 ccaaaggagatttgcaagcttagaaagctacgccat 179  Q
    |||||||||||| |||||||||||||||||||||||    
T  34976782 ccaaaggagattagcaagcttagaaagctacgccat 34976817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 34990658 - 34990739
Alignment:
Q  144 ccaaaggagatttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattaagttgaaggatggtattg 225  Q
    |||||||||||| ||||||||||| ||||||||||| || |||| |   | ||||||||| || | |||||||||| |||||    
T  34990658 ccaaaggagattagcaagcttagacagctacgccatcttataggttgcaggatgtctttgtttcatttgaaggatgttattg 34990739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 27373765 - 27373811
Alignment:
Q  64 aacttccaaaatccattggcatgcttgtgaacctagagactttggat 110  Q
    ||||||| |||| |||||| ||||||| |||||||||||||||||||    
T  27373765 aacttccgaaatacattggaatgcttgagaacctagagactttggat 27373811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University