View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_low_4 (Length: 642)
Name: NF11817_low_4
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 20 - 634
Target Start/End: Original strand, 38357131 - 38357745
Alignment:
| Q |
20 |
ctttcttaagcattgcaccatcaaaagtttgtccataggggatgatcttgccattactcggatattatcgactttttccattctctcttcctctgtatag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357131 |
ctttcttaagcattgcaccatcaaaagtttgtccataggggatgatcttgccattactcggatattatcgactttttccattctctcttcctctgtatag |
38357230 |
T |
|
| Q |
120 |
cttctgaattcaacaccttccaccacttctccagcttttgcatgatcactattagaatctaatattccacattctattgctattgccttagcagtgaata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357231 |
cttctgaattcaacaccttccaccacttctccagcttttgcatgatcactattagaatctaatattccacattctattgctattgccttagcagtgaata |
38357330 |
T |
|
| Q |
220 |
tgttatcgccggtgatcatcttaatttcaactcctgcagctttgcaagtttccacagctttcttagtgtttggtctgcatggatccttgaggccaacgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357331 |
tgttatcgccggtgatcatcttaatttcaactcctgcagctttgcaagtttccacagctttcttagtgtttggtctgcatggatccttgaggccaacgat |
38357430 |
T |
|
| Q |
320 |
gccaagcaatgtcaatccatcttctctaagcatttgatgtgattttttctcccttttgatcatataatcaatatcttcggaatctgaaatctccgtgtga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357431 |
gccaagcaatgtcaatccatcttctctaagcatttgatgtgattttttctcccttttgatcatataatcaatatcttcggaatctgaaatctccgtgtga |
38357530 |
T |
|
| Q |
420 |
gcaaaagcaatacatcttagactactagcagccataccttgaatgattctctcaattttactgcgttcttcttcatcaagggacttcctcgcgccgttac |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357531 |
gcaaaagcaatacatcttagactactagcagccataacttgaatgattctctcaattttactccgttcttcttcatcaagggacttcctcgcgccgttac |
38357630 |
T |
|
| Q |
520 |
tatcaatatagtttgtacacattgcaagtatcatctctgcagctcctttccaatgcacgtgaacgctgttgtcgtcgttctctttccttatagcaacacc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38357631 |
tatcaatatagtttgtacacattgcaagtatcatctctgcagctcctttccaatgcacgtgaacgctgttgtcgtcgttctctttccttatagcaacacc |
38357730 |
T |
|
| Q |
620 |
gcttcgtttcttctc |
634 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38357731 |
gcttcgtttcttctc |
38357745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University