View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_5 (Length: 576)
Name: NF11817_low_5
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Complemental strand, 35035808 - 35035243
Alignment:
| Q |
16 |
acaattgcatatttttgagagggattatatcctaannnnnnnn-gacgcatatatacttttattctaatatgaaaaattctttgccactctaaatgattg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035808 |
acaattgcatatttttgagagggattatatcctaatttttttttgacgcatatatacttttattctaatatgaaaaattctttgccactctaaatgattg |
35035709 |
T |
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| Q |
115 |
aatgtttaataaacc------aaaactcaagggcatcaaactaaccagctatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcaga |
208 |
Q |
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||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035708 |
aatgtttaatacatactcattaaaactctagggcatcaaactaaccagctatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcaga |
35035609 |
T |
|
| Q |
209 |
tatactaagacaaaactccatacaaatta----ttataggaaaagacaaaagtctatacaaattattatnnnnnnnnnnnnnn-gacatttaaataaaca |
303 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035608 |
tatactaagacaaaactccatacaaattaattattataggaaaagacaaaagtctatacaaattattataaaaataaataaaaagacatttaaataaaca |
35035509 |
T |
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| Q |
304 |
catgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacac----tcttgcattggaaatcaatcattgcaacaaatcaaga |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35035508 |
catgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacacacactcttgcattggaaatcaatcattgcaacaaatcaaga |
35035409 |
T |
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| Q |
400 |
tggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||| |
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| T |
35035408 |
tggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaat |
35035309 |
T |
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| Q |
500 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctc |
565 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctc |
35035243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 421 - 561
Target Start/End: Complemental strand, 34974660 - 34974520
Alignment:
| Q |
421 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
520 |
Q |
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|||||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
|
| Q |
521 |
cctaagagcaaatccattatgtgttcaaattctatatttca |
561 |
Q |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttca |
34974520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 34956119 - 34956057
Alignment:
| Q |
500 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcat |
562 |
Q |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcat |
34956057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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