View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_6 (Length: 571)
Name: NF11817_low_6
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 215 - 553
Target Start/End: Complemental strand, 39143384 - 39143047
Alignment:
| Q |
215 |
aagcaaaccaagttttcaaaataatactaaaagcagacaatcaaacatttttaagtttctaaacacaa--tattgttttnnnnnnncaactattagctac |
312 |
Q |
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| T |
39143384 |
aagcaaaccaagttttcaaaataatactaaaagcagacaatcaaacaattttaagtttctaaacacaaaatattgttttaagaaaacaactattaactac |
39143285 |
T |
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| Q |
313 |
aaacaataatagaccaaaaacaaagtttcttttttactaccatagaaattcataatgatgaactaataaatgagaatcaattgaagtgttaaatttttca |
412 |
Q |
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| T |
39143284 |
aaacaataatagaccaaaataaaagtttcttttttactaccatagaaattcataatga---actaataaatgagaatcaattgaagtgttaaatttttca |
39143188 |
T |
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| Q |
413 |
ttacttcaacaactgtagttataccatcattcatattaacattgttcaggattgggttttgtgcgatcacaaactgcaggcagtcacgcagtcaaagatt |
512 |
Q |
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| T |
39143187 |
ttacttcaacaactgtagttataccatcattcatattaacattgttccggattgggttttgtgcaaccacaaactgcaggcagtcacgcagtcaaagatt |
39143088 |
T |
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| Q |
513 |
catgactgtctgattgagattgaaatgttctatctcgttca |
553 |
Q |
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| T |
39143087 |
catgattgtctgattgagattgaaatgttctatctcgttca |
39143047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 39143545 - 39143382
Alignment:
| Q |
1 |
atataagtggcaataatggaaatggtgatgaaggttgtagacttgtagtggtggcaaaagtagtgatgacagttgcaacaagcaatggtgacaacagctg |
100 |
Q |
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| T |
39143545 |
atataagtggcaataatggaaatggtaatgaaggttgtagacttgtagtggtggcaaaagtagtgatgacagttgcaacaagctacggtgacaacagctg |
39143446 |
T |
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| Q |
101 |
gtggtggaagatgatcacagcaacaacagcggtggtagtaggtactaggtagtaaaagttatagttcgaag |
171 |
Q |
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| T |
39143445 |
gtggtggaagatgatcacagcaacaacagcagtggtagta-------ggtagtaaaagttatagttcgaag |
39143382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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