View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11817_low_7 (Length: 515)
Name: NF11817_low_7
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 34352711 - 34352231
Alignment:
| Q |
18 |
agtaacaatatttattttatcttcttttatatgttttcattaggta----atgctgttgtatgcaacttttttgaaagaccaaaaatatatttaatatat |
113 |
Q |
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| T |
34352711 |
agtaacaatatttattttatcttcttttatatgttttcattaggtacgtaatgctgttgtatgcaacttttttgacagaccaaaaatatatttaatatat |
34352612 |
T |
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| Q |
114 |
tttttaaaggtttatgaattacatatctttagtttctggtactctttaaatggcacagaaagttaaaaatgagaccacaagaaaaggtcaccttcttctt |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34352611 |
tttttaaagggttatgaattacatatctttagtttctggtactctttaaatggcacaaaaagttaaaaatgagaccacaagaaaaggtcaccttcctctt |
34352512 |
T |
|
| Q |
214 |
gccttgtttttgcaaacattccattatgtttctattcatctgcattattcatattaatgtaaagctagagcaagaggaaccgtaatcttggtgcttgttc |
313 |
Q |
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| T |
34352511 |
gccttgttttcgcaaacattccattatgtttctattcatctgcattattcatattaatgtaaagctagagcaagaggaaccgtaatcttggtgcttgt-- |
34352414 |
T |
|
| Q |
314 |
tattaccattgcagaattatgtgctatctcccaagatcttcaaattgctcatggtagaggtttcccatgtattttgattgaacgattcattagccacaat |
413 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34352413 |
tattaccattgcagaattatgtgctatcttccaagatcttcaaattgcttatggtagaggtttcccatgtattttgattgaacgattcattagccacaat |
34352314 |
T |
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| Q |
414 |
taaattcatgactggtggttgttctattgttcattctttgcatggtttgttgcaaaatattagagtcaacgcaacacacatga |
496 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34352313 |
taaatttatgaccggtggttgttctattgttcattctttgcatggtttgttgcaaaatattagagtcatcgcaacacacatga |
34352231 |
T |
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