View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11817_low_8 (Length: 515)
Name: NF11817_low_8
Description: NF11817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11817_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 72 - 352
Target Start/End: Complemental strand, 5065522 - 5065241
Alignment:
| Q |
72 |
attataaagtgtgtgataatattgaatattgatatcttgcagaaagagcattttgctattagagaaaggaaaaagccagaagatcctatagattgtaatg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5065522 |
attataaagtgtgtgataatattgaatattgatatcttgcagaaagagcattttgctattagagaaaggaaaaagccagaagatcctatagattgtaatg |
5065423 |
T |
|
| Q |
172 |
atctcaagtctatgaggtttactcgcgcagtaagtagcgttgtaatatcttttcattaaccgtcaaaaacatcaatgtcgttctttaaaattagaagttc |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5065422 |
atctcaagtctatgaggtttactcgagcagtaagtagcgttgtaatatcttttcattaactgtcaaaaacatctatgtcgttctttaaaattagaagttc |
5065323 |
T |
|
| Q |
272 |
aaagtctttctcgtt-tcacgactaagacagtgacttagacgttattataagaaagatcgtgaacttctatttttgatagtc |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
5065322 |
aaagtctttctcgttctcacgactaagacagtgacttagacgttattataagaaagaccgtgaacttttacttttgatagtc |
5065241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 351 - 507
Target Start/End: Complemental strand, 5065207 - 5065051
Alignment:
| Q |
351 |
tccacaatgctattaagattgatttttccattaaattgtgtcttttgcaggtgatttttgagacctcgagattagctactatagttaatggagttctgag |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5065207 |
tccacaatgctattaagattgatttttccattaaattgtgtcttttgcaggtgatttttgagacctcgagattagctactatagttaatggagttctgag |
5065108 |
T |
|
| Q |
451 |
aaaaacaactcatgacatggaattaaatggtgagttttttgagtggcctatttcatt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5065107 |
aaaaacaactcatgacatggaattaaatggtgagttttttgagtggcctatttcatt |
5065051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 5065576 - 5065544
Alignment:
| Q |
18 |
aatgagggtatgtggaaaagttatcattattgc |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5065576 |
aatgagggtatgtggaaaagttatcattattgc |
5065544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 5589127 - 5589045
Alignment:
| Q |
399 |
aggtgatttttgagacctcgagattagctactatagttaatggagttctgagaaaaacaactcatgacatggaattaaatggt |
481 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||||||||| || ||||| ||||| || |||||| |||||||| |
|
|
| T |
5589127 |
aggtgatttttgagacatctagattggccacaatagttaatggagttctaaggaaaaccactcaagatatggaactaaatggt |
5589045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 5589309 - 5589207
Alignment:
| Q |
103 |
atatcttgcagaaagagcattttgctattagagaaaggaaaaagccagaagatcctatagattgtaatgatctcaagtctatgaggtttactcgcgcagt |
202 |
Q |
| |
|
|||| ||||||||||||||||| || || ||||| |||||||||||| | || || || |||| ||||||||||| || |||||||||||||| || || |
|
|
| T |
5589309 |
atatgttgcagaaagagcatttggccataagagagaggaaaaagccaaatgaaccaattgattccaatgatctcaaatcaatgaggtttactcgtgcggt |
5589210 |
T |
|
| Q |
203 |
aag |
205 |
Q |
| |
|
||| |
|
|
| T |
5589209 |
aag |
5589207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 973935 - 973853
Alignment:
| Q |
399 |
aggtgatttttgagacctcgagattagctactatagttaatggagttctgagaaaaacaactcatgacatggaattaaatggt |
481 |
Q |
| |
|
|||| ||||||||||| | ||||| || || ||||||||||||||||| || ||||| ||||| || |||||| |||||||| |
|
|
| T |
973935 |
aggttatttttgagacaactagattggccacaatagttaatggagttctaaggaaaaccactcaagatatggaactaaatggt |
973853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 974112 - 974010
Alignment:
| Q |
103 |
atatcttgcagaaagagcattttgctattagagaaaggaaaaagccagaagatcctatagattgtaatgatctcaagtctatgaggtttactcgcgcagt |
202 |
Q |
| |
|
|||| ||||||||||||||||| || || ||||| |||||||| ||| | || || || |||| ||||||||||| || |||| ||||||||| || || |
|
|
| T |
974112 |
atatgttgcagaaagagcatttggccataagagagaggaaaaaaccaaatgaaccaattgattccaatgatctcaaatcaatgaagtttactcgtgcggt |
974013 |
T |
|
| Q |
203 |
aag |
205 |
Q |
| |
|
||| |
|
|
| T |
974012 |
aag |
974010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University