View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_high_1 (Length: 704)
Name: NF11818_high_1
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 170 - 685
Target Start/End: Complemental strand, 14202899 - 14202384
Alignment:
| Q |
170 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
269 |
Q |
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| T |
14202899 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
14202800 |
T |
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| Q |
270 |
ctataaagtatttccgtagcagctaagtaatttttatagnnnnnnnnnnccttaaccatccaattctaataagggaaagggggcattaattaataatttc |
369 |
Q |
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| T |
14202799 |
ctataaagtatttccgtagcagctaagtaatttttatagttttttttttccttaaccatccaattctaataagggaaaggggacattaattaataatttc |
14202700 |
T |
|
| Q |
370 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
469 |
Q |
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| T |
14202699 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
14202600 |
T |
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| Q |
470 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgtaaagacttttttcatttctctgccttcgaatacaggact |
569 |
Q |
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| T |
14202599 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgcaaagacttttttcaatcctcttccttcgaatacaggact |
14202500 |
T |
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| Q |
570 |
aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatgtcttttaactt |
669 |
Q |
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| T |
14202499 |
aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatatcttttaactt |
14202400 |
T |
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| Q |
670 |
ttgatcatgtatgaaa |
685 |
Q |
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| T |
14202399 |
ttgatcatgtatgaaa |
14202384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 14203317 - 14203215
Alignment:
| Q |
18 |
agagacagaaatgacacgttctctattttgttggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggaca |
117 |
Q |
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| T |
14203317 |
agagacagaaatgacacattatccattttgtaggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggaca |
14203218 |
T |
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| Q |
118 |
ata |
120 |
Q |
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||| |
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| T |
14203217 |
ata |
14203215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Complemental strand, 14202932 - 14202897
Alignment:
| Q |
248 |
atgtttattctcactctttgaactataaagtatttc |
283 |
Q |
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| T |
14202932 |
atgtttattctcactctttgaactataaagtatttc |
14202897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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