View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_high_10 (Length: 387)
Name: NF11818_high_10
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 29092985 - 29093351
Alignment:
| Q |
19 |
taaagctctttgaaacataataaaccatcaaataattttaattttc-aggtacttttcactcacttgaatctaaaagaagtaattcaattaaatacaaaa |
117 |
Q |
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| T |
29092985 |
taaagctctttgaaacataataaaccatcaaataattttaatcttccaggtacttttcactcacttgaatctaaaagaagtaattcaattaaatacaaaa |
29093084 |
T |
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| Q |
118 |
ttcacacattaaggttatttttcccacataaatacgaagttcactatgtgttatgagatcacggtgatgtaaccagctgcaatgcacaaaacaatgactt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29093085 |
ttcacacattaaggttattcttcccacataaatacgaagttcactacgtgttatgagatcacggtgatgtaaccagctgcaatgcacaaaataatgactt |
29093184 |
T |
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| Q |
218 |
aataataa-ag--gtg----ggtttccatcaaatgagttcagttctgcaagccatcgccacaaaaaacaaagatatctgttatattttgatcaatggtca |
310 |
Q |
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|||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29093185 |
aataataagagtagtgatatggtttccatcaaatgagttcagttctgcaagccatcgccacaaaaaacaaagatatctgttatattttgatcaatggtca |
29093284 |
T |
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| Q |
311 |
cgattttagttgtgcata---tttcaaaaacggatataggagccaactatcgtcctttccatcctct |
374 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29093285 |
cgattttagttgtgcatatggtttcaaaaacggatataggagccaactatcgtcctttccatcctct |
29093351 |
T |
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