View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_high_16 (Length: 283)
Name: NF11818_high_16
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 31035160 - 31034904
Alignment:
| Q |
20 |
tcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatttcacggttacggcttaaacatgattgttaactacacactca |
119 |
Q |
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| T |
31035160 |
tcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatt-cacggttacgacttaaacatgattgttaactacacactca |
31035062 |
T |
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| Q |
120 |
caacaacaacaaatcttcaatcgagtgaaagcctttctctctccagatgaaattaccattctttatcttcaacacaaatatggaaaaattacacggtcca |
219 |
Q |
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| T |
31035061 |
caacaacaacaaatcttcaatcgagtgaaagcctttctctctccggatgaaattacccttctttatcttcaacacaaatatgaaaaaattacacggtcca |
31034962 |
T |
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| Q |
220 |
cacaccatcaacaacctcaccacaacctctttccatcaccatacatcattcatctctc |
277 |
Q |
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| T |
31034961 |
cacaccatcaacaacctcaccacaacctctttccatcaccatacatcatccatctctc |
31034904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 31028198 - 31027961
Alignment:
| Q |
20 |
tcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatttcacggttacggcttaaacatgattgttaactacacactca |
119 |
Q |
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| T |
31028198 |
tcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatt-cacggttacggcttaaacatgattgttaactacacactca |
31028100 |
T |
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| Q |
120 |
caacaacaacaaatcttcaatcgagtgaaagcctttctctctccagatgaaattaccattctttatcttcaacacaaatatggaaaaattacacggtcca |
219 |
Q |
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| T |
31028099 |
caacaacaacaaatcttcaatcgagtgaaagcctttctctc--cggatgaaattacaattctttatcttcaacacaaatatggaaaaattacgtggtcca |
31028002 |
T |
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| Q |
220 |
cacaccatcaacaacctcaccacaacctctttccatcacca |
260 |
Q |
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| T |
31028001 |
cacaccatcaacaacctcaccacaacctatttccatcacca |
31027961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 13435188 - 13435424
Alignment:
| Q |
34 |
ttgtctttgatacctcatgtgttgtggagttaattgtggacaatttcacggttacggcttaaacatgattgttaactacacactcacaacaacaacaaat |
133 |
Q |
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|||| ||||||||||| |||||||| ||| |||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
13435188 |
ttgtttttgatacctcttgtgttgtagagctaattgcagacaatt-cactattatggcttaaacatgattgttaactacacactcacaacaacaat---t |
13435283 |
T |
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| Q |
134 |
cttcaatcgagtgaaagcctttctctctccagatgaaattaccattctttatcttcaacacaaatatggaaaa-attacacggtccacacaccatcaaca |
232 |
Q |
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||||||||||||||||| |||| |||| ||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
13435284 |
cttcaatcgagtgaaagtcttttcctctg--gataaaattacccttctttatcttcaacacaaatctggaaaaaattacacggtccacacaccatcaaca |
13435381 |
T |
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| Q |
233 |
acctcaccacaacctctttccatcaccatacatcattcatctctc |
277 |
Q |
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| T |
13435382 |
acctcaccacaacctc-ttccatcacca-acatcatccatctctc |
13435424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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