View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11818_high_20 (Length: 240)

Name: NF11818_high_20
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11818_high_20
NF11818_high_20
[»] chr1 (2 HSPs)
chr1 (18-234)||(1309200-1309418)
chr1 (19-227)||(1288661-1288871)
[»] scaffold0245 (1 HSPs)
scaffold0245 (19-227)||(15065-15275)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 1309418 - 1309200
Alignment:
Q  18 atttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttcttaattccctaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||| |||||  | ||||    
T  1309418 atttttcacttctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttctaaattcattgaagg 1309319  T
Q  118 t--tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcattagtttatttatata 215  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1309318 taatatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcattagtttatttatata 1309219  T
Q  216 cactgcgtttctctgcttc 234  Q
    ||||||||||||| |||||    
T  1309218 cactgcgtttctcggcttc 1309200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 1288871 - 1288661
Alignment:
Q  19 tttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttcttaattccctaaaggt 118  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||| |||||  | |||||    
T  1288871 tttttcactcctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttctaaattcattgaaggt 1288772  T
Q  119 --tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcattagtttatttatatac 216  Q
      |||||||||||||||||||||||  ||||||| || ||||| |||| | || || || || ||||||||||||||||||  ||  ||| ||| |||||    
T  1288771 aatatatttctggaaatttattgtttcttatgcttttcaaaatgatttcacgcctctccattcatgtgccagtctgtgccttgttcctttctttgtatac 1288672  T
Q  217 actgcgtttct 227  Q
    ||||| |||||    
T  1288671 actgcttttct 1288661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 15275 - 15065
Alignment:
Q  19 tttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttcttaattccctaaaggt 118  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||| |||||  | |||||    
T  15275 tttttcactcctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttctaaattcattgaaggt 15176  T
Q  119 --tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcattagtttatttatatac 216  Q
      |||||||||||||||||||||||  ||||||| || ||||| |||| | || || || || ||||||||||||||||||  ||  ||| ||| |||||    
T  15175 aatatatttctggaaatttattgtttcttatgcttttcaaaatgatttcacgcctctccattcatgtgccagtctgtgccttgttcctttctttgtatac 15076  T
Q  217 actgcgtttct 227  Q
    ||||| |||||    
T  15075 actgcttttct 15065  T

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