View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11818_high_22 (Length: 238)

Name: NF11818_high_22
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11818_high_22
NF11818_high_22
[»] chr5 (2 HSPs)
chr5 (1-223)||(34250128-34250342)
chr5 (1-63)||(15368570-15368631)
[»] chr7 (6 HSPs)
chr7 (1-63)||(33853410-33853472)
chr7 (1-62)||(45557462-45557523)
chr7 (1-62)||(17111942-17112003)
chr7 (1-47)||(12306820-12306866)
chr7 (1-63)||(25156297-25156359)
chr7 (1-63)||(29829295-29829357)
[»] chr6 (9 HSPs)
chr6 (1-100)||(34063409-34063501)
chr6 (1-59)||(34620983-34621041)
chr6 (1-59)||(34748420-34748478)
chr6 (1-59)||(28466914-28466972)
chr6 (1-59)||(34736761-34736819)
chr6 (1-62)||(34911040-34911100)
chr6 (1-51)||(3798997-3799047)
chr6 (1-47)||(7953080-7953126)
chr6 (5-57)||(34026417-34026469)
[»] chr4 (3 HSPs)
chr4 (1-63)||(48045678-48045740)
chr4 (1-63)||(33843808-33843870)
chr4 (64-100)||(54683484-54683520)
[»] chr3 (6 HSPs)
chr3 (1-63)||(35058451-35058513)
chr3 (3-47)||(37334976-37335020)
chr3 (12-63)||(5407008-5407059)
chr3 (4-49)||(3776622-3776667)
chr3 (3-63)||(46853460-46853520)
chr3 (64-100)||(52813326-52813362)
[»] chr2 (4 HSPs)
chr2 (1-63)||(1976790-1976852)
chr2 (1-56)||(4894090-4894145)
chr2 (1-58)||(30503304-30503361)
chr2 (1-57)||(488650-488706)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-47)||(14056-14102)
[»] chr8 (1 HSPs)
chr8 (1-35)||(4950580-4950614)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34250342 - 34250128
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaatttatcaatttttctcaccgtagaaccaaacacacactaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||        ||||||||||||||| |||||||||||||    
T  34250342 aaacataaatcactttagcttcaactcaattatagtcaaaatcaattcactcaaaatcaattt--------ttctcaccgtagaactaaacacacactaa 34250251  T
Q  101 caattaactttggttgtttcaaacnnnnnnngaattgcacgcccggatcaacctagtcctccatataatcaaaattctaaaataatccccaaattgcaaa 200  Q
    ||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34250250 caattaactttggttgtttcaaacaaaaaaagaatcgcacgcccggatcaacctagtcctccatataatcaaaattctaaaataatccccaaattgcaaa 34250151  T
Q  201 gtattcgtcaagttcgttcatgt 223  Q
    |||||||||||||||||||||||    
T  34250150 gtattcgtcaagttcgttcatgt 34250128  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15368570 - 15368631
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||||||||||||   |||||||||||||  || ||||||||||||||| |||||||||||    
T  15368570 aaacataaatcacttcc-cttcaactcaatttcagccagaatcaattcactcaaaatcaattt 15368631  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33853472 - 33853410
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||||||||||||||||||||||||| |  ||| ||||||||||||||| |||||||||||    
T  33853472 aaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattt 33853410  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45557462 - 45557523
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaatt 62  Q
    ||||| ||||||||||| |||||||||| || ||||||||||||||||| | ||||||||||    
T  45557462 aaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaatcaatt 45557523  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17111942 - 17112003
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaatt 62  Q
    ||||| ||||||||||| || ||| |||||| |||||| |||||||||||| ||||||||||    
T  17111942 aaacacaaatcactttacctacaattcaattttagtcaaaatcaattcactcaaaatcaatt 17112003  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12306820 - 12306866
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaatt 47  Q
    ||||||||||||||||| |||||||||| || ||| |||||||||||    
T  12306820 aaacataaatcactttatcttcaactcacttttagccagaatcaatt 12306866  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25156297 - 25156359
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    ||||| |||||| |||| |||||||||| || |||||||||| || ||||| |||||||||||    
T  25156297 aaacacaaatcattttatcttcaactcatttttagtcagaattaaatcactaaaaatcaattt 25156359  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29829357 - 29829295
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||||||||||||||  ||||||||| || ||| ||||||||||||| | | |||||||||    
T  29829357 aaacataaatcactttacattcaactcatttttagccagaatcaattcattcagaatcaattt 29829295  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 34063409 - 34063501
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaatttatcaatttttctcaccgtagaaccaaacacacactaa 100  Q
    ||||||||||||||||||||||||| ||||| || ||| |||||||||||| ||||  |||     |||||||||||||||| ||||||||| |||||||    
T  34063409 aaacataaatcactttagcttcaacccaattttaatcataatcaattcactcaaaa--aat-----aatttttctcaccgtacaaccaaacatacactaa 34063501  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34620983 - 34621041
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatca 59  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| |||||||    
T  34620983 aaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaatca 34621041  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34748420 - 34748478
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatca 59  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| |||||||    
T  34748420 aaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaatca 34748478  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28466972 - 28466914
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatca 59  Q
    ||||||||| |||| || ||||||||||||| ||| ||||||||||||||| |||||||    
T  28466972 aaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatca 28466914  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34736761 - 34736819
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatca 59  Q
    ||||||||| |||| || ||||||||||||| ||| ||||||||||||||| |||||||    
T  34736761 aaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatca 34736819  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34911040 - 34911100
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaatt 62  Q
    ||||||||||||||| | |||||||||| || ||||| ||||||||||||| ||||||||||    
T  34911040 aaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaatcaatt 34911100  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3798997 - 3799047
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcact 51  Q
    |||||||||||| |||| |||||||||| || || ||||||||||||||||    
T  3798997 aaacataaatcattttatcttcaactcacttttaatcagaatcaattcact 3799047  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7953080 - 7953126
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaatt 47  Q
    ||||||||||||||||| ||||||||||||| | | |||||||||||    
T  7953080 aaacataaatcactttaccttcaactcaattttggccagaatcaatt 7953126  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 34026469 - 34026417
Alignment:
Q  5 ataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaat 57  Q
    |||||| |||||| |||||||||| || ||| ||||||||||||||| |||||    
T  34026469 ataaataactttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48045740 - 48045678
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    ||||||||||||||||| |||||||||| || ||| ||||||||||| ||| |||||||||||    
T  48045740 aaacataaatcactttatcttcaactcagttttagccagaatcaatttactcaaaatcaattt 48045678  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33843808 - 33843870
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||||||||||||||  | ||||||| || ||| ||||||||||||| | |||||||||||    
T  33843808 aaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaattt 33843870  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 54683484 - 54683520
Alignment:
Q  64 atcaatttttctcaccgtagaaccaaacacacactaa 100  Q
    |||||||||| |||||| |||||||||||||||||||    
T  54683484 atcaatttttttcaccgcagaaccaaacacacactaa 54683520  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35058451 - 35058513
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    ||||||||| ||||||| |||||||||| || |||| ||||||||| |||| |||||||||||    
T  35058451 aaacataaagcactttatcttcaactcacttttagttagaatcaatccactcaaaatcaattt 35058513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 37335020 - 37334976
Alignment:
Q  3 acataaatcactttagcttcaactcaattatagtcagaatcaatt 47  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||    
T  37335020 acataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 5407008 - 5407059
Alignment:
Q  12 actttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||| ||||||||||||| |||  |||||||||||||| |||||||||||    
T  5407008 actttaccttcaactcaattttagctagaatcaattcactcaaaatcaattt 5407059  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 3776622 - 3776667
Alignment:
Q  4 cataaatcactttagcttcaactcaattatagtcagaatcaattca 49  Q
    ||||||||||||||  |||||||||||| ||| |||||||||||||    
T  3776622 cataaatcactttacattcaactcaattttagccagaatcaattca 3776667  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 46853520 - 46853460
Alignment:
Q  3 acataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    ||||||||||||||| |||||||| | || ||| || |||||||||||| || ||||||||    
T  46853520 acataaatcactttaccttcaacttacttgtagccaaaatcaattcactcaagatcaattt 46853460  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 52813326 - 52813362
Alignment:
Q  64 atcaatttttctcaccgtagaaccaaacacacactaa 100  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  52813326 atcaattttactcaccgcagaaccaaacacacactaa 52813362  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1976852 - 1976790
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatcaattt 63  Q
    |||||||| || ||||| ||||||||||||| ||| ||||||||||||||| |||| ||||||    
T  1976852 aaacataagtcgctttaccttcaactcaattctagccagaatcaattcactcaaaaacaattt 1976790  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4894145 - 4894090
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaa 56  Q
    ||||||||||||||||| |||||||| |||| |||  |||||||||||||| ||||    
T  4894145 aaacataaatcactttaccttcaacttaattttagctagaatcaattcactcaaaa 4894090  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30503304 - 30503361
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaatc 58  Q
    ||||| |||||| |||| |||||||| | || ||||||||||||||||||| ||||||    
T  30503304 aaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaatc 30503361  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 488650 - 488706
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaattcactgaaaat 57  Q
    ||||||||||||||||| |||||| |||| | ||| | ||||||||||||| |||||    
T  488650 aaacataaatcactttaccttcaaatcaactttagccggaatcaattcactcaaaat 488706  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14102 - 14056
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatagtcagaatcaatt 47  Q
    ||||||||||||||||| ||||||||||||| |||  ||||||||||    
T  14102 aaacataaatcactttaccttcaactcaattgtagcaagaatcaatt 14056  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4950580 - 4950614
Alignment:
Q  1 aaacataaatcactttagcttcaactcaattatag 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  4950580 aaacataaatcactttaccttcaactcaattatag 4950614  T

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