View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_high_4 (Length: 472)
Name: NF11818_high_4
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 31537406 - 31537211
Alignment:
| Q |
12 |
aggagcacagaacatttgaatacaaggttcaaaatagcttactttgagaatataatgggtatgtcacgcacactttgatccttttcttcttctttcaata |
111 |
Q |
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| T |
31537406 |
aggagcacagaacatttgaatacaagattcaaaatggcttactttgagaatataatgggtatgtcacgcacactttgatccttttcttcttctttcaata |
31537307 |
T |
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| Q |
112 |
ttatgcaatcactatatctgcttctgttataacnnnnnnngaataagcttttgttataatatggaattaatttggttattgcttttcagcacttgt |
207 |
Q |
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| T |
31537306 |
ttatgcaatcactatatctgcttctgttataactttttttgaataagcttttgttataatatggaattaatttggttattgcttttctgcaattgt |
31537211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 326 - 454
Target Start/End: Complemental strand, 31536677 - 31536549
Alignment:
| Q |
326 |
cttaggaacaaaaagattgaattagaatgttccgaagttccataacaaaaagagataattatgattatggaaaatttatcatcatgatttcttccacaat |
425 |
Q |
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| T |
31536677 |
cttaggaacaaaaagattgaattagaatgttccgaagttccataacaaaaagagataattatgattatggaaaatttatcatcatgatttcttccacaat |
31536578 |
T |
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| Q |
426 |
cccaaagcaacaaaatctactcacatgtc |
454 |
Q |
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| T |
31536577 |
cccaaagcaacaaaatctactcacatgtc |
31536549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 31537169 - 31537043
Alignment:
| Q |
206 |
gtatcgatccaagaagcacttgcattgagtatcaatctcttttgctatggtgattagataaaagaataatttttgaaaggatggtttttgatagaaaata |
305 |
Q |
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| T |
31537169 |
gtatcgatcccagaagcacttgtattgagtatcaatctcttttgctatggtgattagataaaagaataatttttgaaaggatggtttttgatagaaaata |
31537070 |
T |
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| Q |
306 |
tgcaataatgtataaaatgccttagga |
332 |
Q |
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| T |
31537069 |
tgcaataatgtataaaatgccttagga |
31537043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 31532124 - 31532031
Alignment:
| Q |
12 |
aggagcacagaacatttgaatacaaggttcaaaatagcttactttgagaatataatgggtatgtcacgcacactttgatccttttcttcttctt |
105 |
Q |
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| T |
31532124 |
aggagcacataacatttgaatacaaggttcaaaattgcttactttgagaatataatgggtatctcacgcatactttgatccttttcttcttctt |
31532031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 31531835 - 31531726
Alignment:
| Q |
226 |
tgcattgagtatcaatctcttttgctatggtgattagataaaagaataatttttgaaaggatg-----gtttttgatagaaa-atatgcaataatgtata |
319 |
Q |
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| T |
31531835 |
tgcatcgagtatcaatctcttttgctatggtgatta---acaagaataatttttgaaaggatgtttttttttttaatagaaatatatgcaataatgtaaa |
31531739 |
T |
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| Q |
320 |
aaatgccttagga |
332 |
Q |
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| T |
31531738 |
aaatgtcttagga |
31531726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 31529836 - 31529792
Alignment:
| Q |
152 |
gaataagcttttgttataatatggaattaatttggttattgctttt |
197 |
Q |
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| T |
31529836 |
gaataagcttctgttataatatggaattaa-ttggttattgctttt |
31529792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 31531950 - 31531897
Alignment:
| Q |
153 |
aataagcttttgttataatatggaattaatttggttattgcttttcagcacttgt |
207 |
Q |
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| T |
31531950 |
aataagcgtctgttataatgtggaattaatt-ggttattgcttttctgcacttgt |
31531897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 37007997 - 37007957
Alignment:
| Q |
235 |
tatcaatctcttttgctatggtgattagataaaagaataat |
275 |
Q |
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| T |
37007997 |
tatcaatctcttttgctacggtgatcagctaaaagaataat |
37007957 |
T |
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