View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_high_6 (Length: 410)
Name: NF11818_high_6
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 67 - 410
Target Start/End: Complemental strand, 1673969 - 1673630
Alignment:
| Q |
67 |
attaataaggtagataactaagttgataaggtcacgactcatgagatgacaagattaaatatttagtcgctgtcaactgtatttggtttaaggaaaaggt |
166 |
Q |
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| T |
1673969 |
attaataaggtagataactaagt--ataaggtcacgactcatgagatgacaagattaaatatttagtcgctgtcaactgtatttggtttaaggaaaaggt |
1673872 |
T |
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| Q |
167 |
aaccaagcttggggcaaagaaagtgaatgtgatgaatatgtgttatgaattatggaagctcaatcaattcaaccaccaagaaaataacaacattataaac |
266 |
Q |
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| T |
1673871 |
aaccaagcttggggcaaagaaagtgaa-gtgatgaatatgtgttatgaattatg-aagctcaatcaattcaaccaccaagaaaataacaacactataaac |
1673774 |
T |
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| Q |
267 |
ttttttcttgtagaagttggttatctgatggtactgttatgacgttgaacttgacttaaatgcaaactaattctctgacagaaaccatgtgaggtgactt |
366 |
Q |
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| T |
1673773 |
ttttttcttgtagaagttggttatctgatggtactgttatgacgttgaacttgacttaaatgcaaactaattctctgacagaaaccatgtgaggtgactt |
1673674 |
T |
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| Q |
367 |
actgaactttgaaaactctaataaatgaaagatgtaaaaatttg |
410 |
Q |
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| T |
1673673 |
actgaactttgaaaactctaataaatgaaagacgtaaagatttg |
1673630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 1674180 - 1674119
Alignment:
| Q |
5 |
gagatgaactaatctagtagtaataattataacatttatgattttataattcattttaatac |
66 |
Q |
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| T |
1674180 |
gagatgaactaatctagtagtaataattataacatttatgattttataattcattttaatac |
1674119 |
T |
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